CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRUSI (50S ribosomal protein L20 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRUO2 (50S ribosomal protein L20 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRUME (50S ribosomal protein L20 OS=Brucella melitensis GN=rplT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRUMB (50S ribosomal protein L20 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRUC2 (50S ribosomal protein L20 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRUAB (50S ribosomal protein L20 OS=Brucella abortus GN=rplT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRUA2 (50S ribosomal protein L20 OS=Brucella abortus (strain 2308) GN=rplT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRUA1 (50S ribosomal protein L20 OS=Brucella abortus (strain S19) GN=rplT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_OCHA4 (50S ribosomal protein L20 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3 
Query:  290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPDAFGALVASAKKALEYLKNTETP 126
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RALSO (50S ribosomal protein L20 OS=Ralstonia solanacearum GN=rplT PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 54/101 (53.47%), Postives = 77/101 (76.24%), Query Frame = -3 
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++   AKG+RGR  N  RIA++ V +A QY+YRDRRNKKR  R+LWI RINAG R+HG++Y  FM+GL K +I+L+RKVLS++++H+  +F A+V+
Sbjct:   11 RARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAGAREHGLSYSKFMNGLKKASIELDRKVLSDMAIHDKVAFAAIVN 111
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_BRUSI1.912e-2650.0050S ribosomal protein L20 OS=Brucella suis (strain... [more]
RL20_BRUO21.912e-2650.0050S ribosomal protein L20 OS=Brucella ovis (strain... [more]
RL20_BRUME1.912e-2650.0050S ribosomal protein L20 OS=Brucella melitensis G... [more]
RL20_BRUMB1.912e-2650.0050S ribosomal protein L20 OS=Brucella melitensis b... [more]
RL20_BRUC21.912e-2650.0050S ribosomal protein L20 OS=Brucella canis (strai... [more]
RL20_BRUAB1.912e-2650.0050S ribosomal protein L20 OS=Brucella abortus GN=r... [more]
RL20_BRUA21.912e-2650.0050S ribosomal protein L20 OS=Brucella abortus (str... [more]
RL20_BRUA11.912e-2650.0050S ribosomal protein L20 OS=Brucella abortus (str... [more]
RL20_OCHA43.261e-2650.0050S ribosomal protein L20 OS=Ochrobactrum anthropi... [more]
RL20_RALSO4.259e-2653.4750S ribosomal protein L20 OS=Ralstonia solanacearu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
back to top