CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ECOSE (50S ribosomal protein L20 OS=Escherichia coli (strain SE11) GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3 
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ECOLU (50S ribosomal protein L20 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3 
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ECOLI (50S ribosomal protein L20 OS=Escherichia coli (strain K12) GN=rplT PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3 
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ECOLC (50S ribosomal protein L20 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3 
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ECOL6 (50S ribosomal protein L20 OS=Escherichia coli O6 GN=rplT PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3 
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ECOL5 (50S ribosomal protein L20 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3 
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ECOK1 (50S ribosomal protein L20 OS=Escherichia coli O1:K1 / APEC GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3 
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ECOHS (50S ribosomal protein L20 OS=Escherichia coli O9:H4 (strain HS) GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3 
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ECODH (50S ribosomal protein L20 OS=Escherichia coli (strain K12 / DH10B) GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3 
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116
[Close]
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ECOBW (50S ribosomal protein L20 OS=Escherichia coli (strain K12 / BW2952) GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3 
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_ECOSE1.200e-2043.4050S ribosomal protein L20 OS=Escherichia coli (str... [more]
RL20_ECOLU1.200e-2043.4050S ribosomal protein L20 OS=Escherichia coli O17:... [more]
RL20_ECOLI1.200e-2043.4050S ribosomal protein L20 OS=Escherichia coli (str... [more]
RL20_ECOLC1.200e-2043.4050S ribosomal protein L20 OS=Escherichia coli (str... [more]
RL20_ECOL61.200e-2043.4050S ribosomal protein L20 OS=Escherichia coli O6 G... [more]
RL20_ECOL51.200e-2043.4050S ribosomal protein L20 OS=Escherichia coli O6:K... [more]
RL20_ECOK11.200e-2043.4050S ribosomal protein L20 OS=Escherichia coli O1:K... [more]
RL20_ECOHS1.200e-2043.4050S ribosomal protein L20 OS=Escherichia coli O9:H... [more]
RL20_ECODH1.200e-2043.4050S ribosomal protein L20 OS=Escherichia coli (str... [more]
RL20_ECOBW1.200e-2043.4050S ribosomal protein L20 OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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