CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_CITK8 (50S ribosomal protein L20 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_CHLCH (50S ribosomal protein L20 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -3
Query:  338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637
            R  +K I K AKGF G   N + + +  V+KA QY+YRDRR KKR  RSLWI RINA  R +G  Y   ++G+ K NIQ++RK L+E+++ +  +F A+V
Sbjct:   11 RARRKRILKKAKGFWGARGNVLTVVKHSVDKAEQYAYRDRRAKKRTFRSLWIMRINAAARLNGTTYSQLINGMAKNNIQIDRKALAEIAVKDAAAFSAIV 110          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACTP7 (50S ribosomal protein L20 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 45/106 (42.45%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K++ K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ +++A
Sbjct:   11 RARHKKVLKAAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGLSYSKFINGLKKVSVEIDRKILADIAVFDKVAFAALVEKAKSA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RK20_LEPTE (50S ribosomal protein L20, chloroplastic OS=Leptosira terrestris GN=rpl20 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = -3
Query:  323 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRN 637
            R  +K+I K+ KGFRG +    R A ++  KAL+YSYRDR  +KR+ R+LWI RINA  R  G+NY  F++ + K  I +NRK LS+L++++   F +L+ I  N
Sbjct:   11 RKRRKKILKITKGFRGSSSTLFRTANQQQMKALRYSYRDRLTRKRNFRALWIVRINAMARHLGLNYNQFINNITKAQIIINRKTLSQLAIYDSTIFSSLISIKNN 115          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_YERPY (50S ribosomal protein L20 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rplT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGLSYSRFINGLKKASVEIDRKILADIAVFDKVAFSALVEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_YERPS (50S ribosomal protein L20 OS=Yersinia pseudotuberculosis GN=rplT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGLSYSRFINGLKKASVEIDRKILADIAVFDKVAFSALVEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_YERPP (50S ribosomal protein L20 OS=Yersinia pestis (strain Pestoides F) GN=rplT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGLSYSRFINGLKKASVEIDRKILADIAVFDKVAFSALVEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_YERPN (50S ribosomal protein L20 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGLSYSRFINGLKKASVEIDRKILADIAVFDKVAFSALVEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_YERPG (50S ribosomal protein L20 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGLSYSRFINGLKKASVEIDRKILADIAVFDKVAFSALVEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_YERPE (50S ribosomal protein L20 OS=Yersinia pestis GN=rplT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K+I K AKG+ G      R+A + V KA QY+YRDRR +KR  R LWI RINA  RQ+G++Y  F++GL K +++++RK+L+++++ +  +F ALV+ ++ A
Sbjct:   11 RARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGLSYSRFINGLKKASVEIDRKILADIAVFDKVAFSALVEKAKAA 116          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_CITK81.200e-2043.4050S ribosomal protein L20 OS=Citrobacter koseri (s... [more]
RL20_CHLCH1.200e-2047.0050S ribosomal protein L20 OS=Chlorobium chlorochro... [more]
RL20_ACTP71.200e-2042.4550S ribosomal protein L20 OS=Actinobacillus pleuro... [more]
RK20_LEPTE1.200e-2044.7650S ribosomal protein L20, chloroplastic OS=Leptos... [more]
RL20_YERPY1.568e-2043.4050S ribosomal protein L20 OS=Yersinia pseudotuberc... [more]
RL20_YERPS1.568e-2043.4050S ribosomal protein L20 OS=Yersinia pseudotuberc... [more]
RL20_YERPP1.568e-2043.4050S ribosomal protein L20 OS=Yersinia pestis (stra... [more]
RL20_YERPN1.568e-2043.4050S ribosomal protein L20 OS=Yersinia pestis bv. A... [more]
RL20_YERPG1.568e-2043.4050S ribosomal protein L20 OS=Yersinia pestis bv. A... [more]
RL20_YERPE1.568e-2043.4050S ribosomal protein L20 OS=Yersinia pestis GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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