CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SPHWW (50S ribosomal protein L20 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplT PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = -3
Query:  299 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNI 625
            K I   AKG+ GR KN IRIAR+ VEKA QY+YRDR+ KKR  R+LWIQRINA  R  G+ YG FMHGL    I+L+RKVL++++MHE  +F  ++  ++ A P    I
Sbjct:   15 KRILGAAKGYYGRRKNTIRIARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYGVFMHGLKLAGIELDRKVLADIAMHEGEAFSGIIAQAKAALPEGARI 123          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICCK (50S ribosomal protein L20 OS=Rickettsia canadensis (strain McKiel) GN=rplT PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646
            K  +   K+I KLAKG+RGRA +C R+A  +VEKALQY+YRDRRN+KR+ R LWIQRINA  R HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRANSCFRVAIAKVEKALQYAYRDRRNRKRNFRGLWIQRINAAVRTHGLIYSQFMGTLKKAGIDIDRKVLAELAVNNSDGFASIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHORT (50S ribosomal protein L20 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplT PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.488e-26
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = -3
Query:  338 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 646
            K      K++  LAKG+RGR     RIA E+VEK LQY+YRDRR KKR+ RSLWIQRINAG R+ G+ Y  F++GL++  I+L+RK+L++L++ EP +F +LV
Sbjct:    8 KTNHARHKKVLDLAKGYRGRNSTNFRIAIEKVEKGLQYAYRDRRAKKRNFRSLWIQRINAGAREQGLTYSQFINGLIRAGIELDRKILADLAVTEPAAFASLV 110          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEOSM (50S ribosomal protein L20 OS=Neorickettsia sennetsu (strain Miyayama) GN=rplT PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K++ K AKGF GR+KNC RIA  R+EK+ QY+YRDR+ +KRD RSLWIQRINA  R  G+ Y  FM GL    + +NRKVLSEL++ +P +F  +V+ ++ A
Sbjct:   11 RQRHKKVIKQAKGFHGRSKNCYRIALRRLEKSWQYAYRDRKVRKRDFRSLWIQRINAAVRSFGLVYSVFMKGLKAAGVDVNRKVLSELAISQPSAFGEIVNKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BARBK (50S ribosomal protein L20 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 54/102 (52.94%), Postives = 75/102 (73.53%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+I K A+GF GR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R  G+ YG F+ GL K  I+++RKVLS++++HEP  F ALV  ++ A
Sbjct:   15 KKILKQAEGFYGRRKNTIRAAKAAVDRSKQYAYRDRKNRKRTFRALWIQRINAAVRMEGLTYGRFIDGLSKAGIEIDRKVLSDIAIHEPTVFSALVASAKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHISN (50S ribosomal protein L20 OS=Rhizobium sp. (strain NGR234) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 54/102 (52.94%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+  K AKGF GR KN IR A+  V+++ QY+YRDR+  KR+ R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV+ S+ A
Sbjct:   15 KKTLKAAKGFYGRRKNTIRAAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEASKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHILW (50S ribosomal protein L20 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ K AKGF GR KN IR A+  V+++ QY+YRDR+  KR+ R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV+ ++ A
Sbjct:   15 KKVLKAAKGFYGRRKNTIRTAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPEAFGALVNAAKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHIEC (50S ribosomal protein L20 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 54/102 (52.94%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ K AKGF GR KN IR A+  V++A QY+YRDR+  KR+ R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A
Sbjct:   15 KKVLKAAKGFYGRRKNTIRTAKAAVDRAKQYAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPEAFGALVAAAKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHIE6 (50S ribosomal protein L20 OS=Rhizobium etli (strain CIAT 652) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ K AKGF GR KN IR A+  V+++ QY+YRDR+  KR+ R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV+ ++ A
Sbjct:   15 KKVLKAAKGFYGRRKNTIRAAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPEAFGALVNAAKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RALME (50S ribosomal protein L20 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++   AKG+RGR  N  RIA++ V +A QY+YRDRRNKKR  R+LWI RINA TR+HG+ Y  FM+GL K +I+L+RKVLS++++H+  +F A+V+
Sbjct:   11 RARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVN 111          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_SPHWW7.265e-2653.2150S ribosomal protein L20 OS=Sphingomonas wittichi... [more]
RL20_RICCK7.265e-2653.8550S ribosomal protein L20 OS=Rickettsia canadensis... [more]
RL20_RHORT9.488e-2653.4050S ribosomal protein L20 OS=Rhodospirillum rubrum... [more]
RL20_NEOSM1.618e-2552.8350S ribosomal protein L20 OS=Neorickettsia sennets... [more]
RL20_BARBK2.114e-2552.9450S ribosomal protein L20 OS=Bartonella bacillifor... [more]
RL20_RHISN2.761e-2552.9450S ribosomal protein L20 OS=Rhizobium sp. (strain... [more]
RL20_RHILW2.761e-2551.9650S ribosomal protein L20 OS=Rhizobium leguminosar... [more]
RL20_RHIEC2.761e-2552.9450S ribosomal protein L20 OS=Rhizobium etli (strai... [more]
RL20_RHIE62.761e-2551.9650S ribosomal protein L20 OS=Rhizobium etli (strai... [more]
RL20_RALME2.761e-2553.4750S ribosomal protein L20 OS=Ralstonia metallidura... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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