CX298468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SPHWW (50S ribosomal protein L20 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplT PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26 Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = -3 Query: 299 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNI 625 K I AKG+ GR KN IRIAR+ VEKA QY+YRDR+ KKR R+LWIQRINA R G+ YG FMHGL I+L+RKVL++++MHE +F ++ ++ A P I Sbjct: 15 KRILGAAKGYYGRRKNTIRIARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYGVFMHGLKLAGIELDRKVLADIAMHEGEAFSGIIAQAKAALPEGARI 123
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICCK (50S ribosomal protein L20 OS=Rickettsia canadensis (strain McKiel) GN=rplT PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26 Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = -3 Query: 335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646 K + K+I KLAKG+RGRA +C R+A +VEKALQY+YRDRRN+KR+ R LWIQRINA R HG+ Y FM L K I ++RKVL+EL+++ F ++V+ Sbjct: 8 KISKNRHKKILKLAKGYRGRANSCFRVAIAKVEKALQYAYRDRRNRKRNFRGLWIQRINAAVRTHGLIYSQFMGTLKKAGIDIDRKVLAELAVNNSDGFASIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHORT (50S ribosomal protein L20 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplT PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.488e-26 Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = -3 Query: 338 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 646 K K++ LAKG+RGR RIA E+VEK LQY+YRDRR KKR+ RSLWIQRINAG R+ G+ Y F++GL++ I+L+RK+L++L++ EP +F +LV Sbjct: 8 KTNHARHKKVLDLAKGYRGRNSTNFRIAIEKVEKGLQYAYRDRRAKKRNFRSLWIQRINAGAREQGLTYSQFINGLIRAGIELDRKILADLAVTEPAAFASLV 110
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEOSM (50S ribosomal protein L20 OS=Neorickettsia sennetsu (strain Miyayama) GN=rplT PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25 Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R K++ K AKGF GR+KNC RIA R+EK+ QY+YRDR+ +KRD RSLWIQRINA R G+ Y FM GL + +NRKVLSEL++ +P +F +V+ ++ A Sbjct: 11 RQRHKKVIKQAKGFHGRSKNCYRIALRRLEKSWQYAYRDRKVRKRDFRSLWIQRINAAVRSFGLVYSVFMKGLKAAGVDVNRKVLSELAISQPSAFGEIVNKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BARBK (50S ribosomal protein L20 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplT PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25 Identity = 54/102 (52.94%), Postives = 75/102 (73.53%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+I K A+GF GR KN IR A+ V+++ QY+YRDR+N+KR R+LWIQRINA R G+ YG F+ GL K I+++RKVLS++++HEP F ALV ++ A Sbjct: 15 KKILKQAEGFYGRRKNTIRAAKAAVDRSKQYAYRDRKNRKRTFRALWIQRINAAVRMEGLTYGRFIDGLSKAGIEIDRKVLSDIAIHEPTVFSALVASAKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHISN (50S ribosomal protein L20 OS=Rhizobium sp. (strain NGR234) GN=rplT PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 54/102 (52.94%), Postives = 76/102 (74.51%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+ K AKGF GR KN IR A+ V+++ QY+YRDR+ KR+ R+LWIQRINA R+ G+ YG F+ GL K I+++RKVLS++++HEP +F ALV+ S+ A Sbjct: 15 KKTLKAAKGFYGRRKNTIRAAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEASKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHILW (50S ribosomal protein L20 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplT PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ K AKGF GR KN IR A+ V+++ QY+YRDR+ KR+ R+LWIQRINA R+ G+ YG F+ GL K I+++RKVLS++++HEP +F ALV+ ++ A Sbjct: 15 KKVLKAAKGFYGRRKNTIRTAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPEAFGALVNAAKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHIEC (50S ribosomal protein L20 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplT PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 54/102 (52.94%), Postives = 76/102 (74.51%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ K AKGF GR KN IR A+ V++A QY+YRDR+ KR+ R+LWIQRINA R+ G+ YG F+ GL K I+++RKVLS++++HEP +F ALV ++ A Sbjct: 15 KKVLKAAKGFYGRRKNTIRTAKAAVDRAKQYAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPEAFGALVAAAKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHIE6 (50S ribosomal protein L20 OS=Rhizobium etli (strain CIAT 652) GN=rplT PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ K AKGF GR KN IR A+ V+++ QY+YRDR+ KR+ R+LWIQRINA R+ G+ YG F+ GL K I+++RKVLS++++HEP +F ALV+ ++ A Sbjct: 15 KKVLKAAKGFYGRRKNTIRAAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPEAFGALVNAAKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RALME (50S ribosomal protein L20 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplT PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R K++ AKG+RGR N RIA++ V +A QY+YRDRRNKKR R+LWI RINA TR+HG+ Y FM+GL K +I+L+RKVLS++++H+ +F A+V+ Sbjct: 11 RARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVN 111 The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bpback to top |