CX298468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RALEJ (50S ribosomal protein L20 OS=Ralstonia eutropha (strain JMP134) GN=rplT PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R K++ AKG+RGR N RIA++ V +A QY+YRDRRNKKR R+LWI RINA TR+HG+ Y FM+GL K +I+L+RKVLS++++H+ +F A+V+ Sbjct: 11 RARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVN 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RALEH (50S ribosomal protein L20 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rplT PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R K++ AKG+RGR N RIA++ V +A QY+YRDRRNKKR R+LWI RINA TR+HG+ Y FM+GL K +I+L+RKVLS++++H+ +F A+V+ Sbjct: 11 RARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVN 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_CUPTR (50S ribosomal protein L20 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplT PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R K++ AKG+RGR N RIA++ V +A QY+YRDRRNKKR R+LWI RINA TR+HG+ Y FM+GL K +I+L+RKVLS++++H+ +F A+V+ Sbjct: 11 RARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVN 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_AGRVS (50S ribosomal protein L20 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplT PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ K AKGF GR KN IR A+ V+++ Q++YRDR+ KR+ R+LWIQRINA R+ G+ YG F+ GL K I+++RKVLS++++HEP +F ALV+ S+ A Sbjct: 15 KKVLKAAKGFYGRRKNTIRAAKAAVDRSKQFAYRDRKVNKRNFRALWIQRINAAVRESGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEASKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACAM1 (50S ribosomal protein L20 OS=Acaryochloris marina (strain MBIC 11017) GN=rplT PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25 Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R +K+I KLAKG+RG RIA ++V KAL+ +YRDRR +KRD R LWI RINA TRQHGV+Y FM L + +IQLNRK+L++L+ +P SF +V+++ A Sbjct: 11 RKRRKKILKLAKGYRGSHSRLFRIANQQVMKALRNAYRDRRKRKRDFRRLWIARINAATRQHGVSYSKFMGQLKRADIQLNRKMLAQLAATDPDSFSKIVELAGKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHIL3 (50S ribosomal protein L20 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplT PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25 Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ K AKGF GR KN IR A+ V+++ QY+YRDR+ KR+ R+LWIQRINA R+ G+ YG F+ GL K I+++RKVLS++++HEP +F ALV ++ A Sbjct: 15 KKVLKAAKGFYGRRKNTIRTAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPEAFGALVSAAKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_GLUOX (50S ribosomal protein L20 OS=Gluconobacter oxydans GN=rplT PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25 Identity = 53/96 (55.21%), Postives = 74/96 (77.08%), Query Frame = -3 Query: 338 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 625 K++ +LAKG+RGR+ RIA ERVEKAL+Y+YRDRRNKKRD R+LWIQRINA R+HG+ Y F++GL K I+++RKVL+ ++ + +F +V Sbjct: 15 KKVLELAKGYRGRSSTNYRIALERVEKALRYAYRDRRNKKRDFRALWIQRINAAVREHGLTYSRFINGLDKAGIEIDRKVLAAIAFDDSAAFGEIV 110
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_AGRRK (50S ribosomal protein L20 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplT PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25 Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ K A+GF GR KN IR A+ V+++ QY+YRDR+ KR+ R+LWIQRINA R+HG+ YG F+ GL K I+++RKVLS++++HE +F ALV S+ A Sbjct: 15 KKVLKQARGFYGRRKNTIRTAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVREHGLTYGRFIDGLTKAGIEVDRKVLSDMAIHETEAFGALVAASKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOP5 (50S ribosomal protein L20 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplT PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.150e-25 Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+++K AKGFRGR KN IR A+ V+KA QY++RDR+ KKR R+LWIQRINA R G+ Y F++GL K + ++RKVLS+L++HEP +F+A+ + ++ A Sbjct: 15 KKVYKAAKGFRGRRKNTIRAAKAAVDKAGQYAFRDRKRKKRTFRALWIQRINAAVRPLGMTYSVFINGLAKSGVIVDRKVLSDLAIHEPVAFQAIAEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SINMW (50S ribosomal protein L20 OS=Sinorhizobium medicae (strain WSM419) GN=rplT PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25 Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+ K AKGF GR KN IR A+ V+++ Q++YRDR+ KR+ R+LWIQRINA R+ G+ YG F+ GL K I+++RKVLS++++HEP +F ALV+ S+ A Sbjct: 15 KKTLKAAKGFYGRRKNTIRAAKAAVDRSKQFAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEASKKA 116 The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bpback to top |