CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RALEJ (50S ribosomal protein L20 OS=Ralstonia eutropha (strain JMP134) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++   AKG+RGR  N  RIA++ V +A QY+YRDRRNKKR  R+LWI RINA TR+HG+ Y  FM+GL K +I+L+RKVLS++++H+  +F A+V+
Sbjct:   11 RARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVN 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RALEH (50S ribosomal protein L20 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++   AKG+RGR  N  RIA++ V +A QY+YRDRRNKKR  R+LWI RINA TR+HG+ Y  FM+GL K +I+L+RKVLS++++H+  +F A+V+
Sbjct:   11 RARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVN 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_CUPTR (50S ribosomal protein L20 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++   AKG+RGR  N  RIA++ V +A QY+YRDRRNKKR  R+LWI RINA TR+HG+ Y  FM+GL K +I+L+RKVLS++++H+  +F A+V+
Sbjct:   11 RARHKKVIDAAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVN 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_AGRVS (50S ribosomal protein L20 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ K AKGF GR KN IR A+  V+++ Q++YRDR+  KR+ R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV+ S+ A
Sbjct:   15 KKVLKAAKGFYGRRKNTIRAAKAAVDRSKQFAYRDRKVNKRNFRALWIQRINAAVRESGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEASKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACAM1 (50S ribosomal protein L20 OS=Acaryochloris marina (strain MBIC 11017) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R  +K+I KLAKG+RG      RIA ++V KAL+ +YRDRR +KRD R LWI RINA TRQHGV+Y  FM  L + +IQLNRK+L++L+  +P SF  +V+++  A
Sbjct:   11 RKRRKKILKLAKGYRGSHSRLFRIANQQVMKALRNAYRDRRKRKRDFRRLWIARINAATRQHGVSYSKFMGQLKRADIQLNRKMLAQLAATDPDSFSKIVELAGKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHIL3 (50S ribosomal protein L20 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplT PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ K AKGF GR KN IR A+  V+++ QY+YRDR+  KR+ R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A
Sbjct:   15 KKVLKAAKGFYGRRKNTIRTAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPEAFGALVSAAKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_GLUOX (50S ribosomal protein L20 OS=Gluconobacter oxydans GN=rplT PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 53/96 (55.21%), Postives = 74/96 (77.08%), Query Frame = -3
Query:  338 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 625
            K++ +LAKG+RGR+    RIA ERVEKAL+Y+YRDRRNKKRD R+LWIQRINA  R+HG+ Y  F++GL K  I+++RKVL+ ++  +  +F  +V
Sbjct:   15 KKVLELAKGYRGRSSTNYRIALERVEKALRYAYRDRRNKKRDFRALWIQRINAAVREHGLTYSRFINGLDKAGIEIDRKVLAAIAFDDSAAFGEIV 110          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_AGRRK (50S ribosomal protein L20 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplT PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ K A+GF GR KN IR A+  V+++ QY+YRDR+  KR+ R+LWIQRINA  R+HG+ YG F+ GL K  I+++RKVLS++++HE  +F ALV  S+ A
Sbjct:   15 KKVLKQARGFYGRRKNTIRTAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVREHGLTYGRFIDGLTKAGIEVDRKVLSDMAIHETEAFGALVAASKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOP5 (50S ribosomal protein L20 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplT PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.150e-25
Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+++K AKGFRGR KN IR A+  V+KA QY++RDR+ KKR  R+LWIQRINA  R  G+ Y  F++GL K  + ++RKVLS+L++HEP +F+A+ + ++ A
Sbjct:   15 KKVYKAAKGFRGRRKNTIRAAKAAVDKAGQYAFRDRKRKKRTFRALWIQRINAAVRPLGMTYSVFINGLAKSGVIVDRKVLSDLAIHEPVAFQAIAEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SINMW (50S ribosomal protein L20 OS=Sinorhizobium medicae (strain WSM419) GN=rplT PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+  K AKGF GR KN IR A+  V+++ Q++YRDR+  KR+ R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV+ S+ A
Sbjct:   15 KKTLKAAKGFYGRRKNTIRAAKAAVDRSKQFAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEASKKA 116          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_RALEJ2.761e-2553.4750S ribosomal protein L20 OS=Ralstonia eutropha (s... [more]
RL20_RALEH2.761e-2553.4750S ribosomal protein L20 OS=Ralstonia eutropha (s... [more]
RL20_CUPTR2.761e-2553.4750S ribosomal protein L20 OS=Cupriavidus taiwanens... [more]
RL20_AGRVS2.761e-2551.9650S ribosomal protein L20 OS=Agrobacterium vitis (... [more]
RL20_ACAM12.761e-2552.8350S ribosomal protein L20 OS=Acaryochloris marina ... [more]
RL20_RHIL33.605e-2551.9650S ribosomal protein L20 OS=Rhizobium leguminosar... [more]
RL20_GLUOX3.605e-2555.2150S ribosomal protein L20 OS=Gluconobacter oxydans... [more]
RL20_AGRRK4.709e-2551.9650S ribosomal protein L20 OS=Agrobacterium radioba... [more]
RL20_RHOP56.150e-2551.9650S ribosomal protein L20 OS=Rhodopseudomonas palu... [more]
RL20_SINMW8.032e-2551.9650S ribosomal protein L20 OS=Sinorhizobium medicae... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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