CX298468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHIME (50S ribosomal protein L20 OS=Rhizobium meliloti GN=rplT PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25 Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+ K AKGF GR KN IR A+ V+++ Q++YRDR+ KR+ R+LWIQRINA R+ G+ YG F+ GL K I+++RKVLS++++HEP +F ALV+ S+ A Sbjct: 15 KKTLKAAKGFYGRRKNTIRAAKAAVDRSKQFAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEASKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIMB (50S ribosomal protein L20 OS=Neisseria meningitidis serogroup B GN=rplT PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25 Identity = 53/106 (50.00%), Postives = 80/106 (75.47%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R ++IF LAKG+RGR KN R+A++ V KA QY+YRDRR +KR R LWI RINAGTR++G++Y FM+GL + +I+++RKVL++L++ + +F LV+ ++ A Sbjct: 11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGTRENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_DEIDV (50S ribosomal protein L20 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rplT PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25 Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = -3 Query: 323 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRN 637 R K++ K AKGF G R A + + A Y YRDRRNKKRD R LW+QRINAG R HG+NY F+ GL + + LNRKVL++++ EP +FKALVD ++N Sbjct: 11 RRRHKKVLKRAKGFEGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWVQRINAGARLHGMNYSTFIGGLKRAGVDLNRKVLADIAAREPEAFKALVDAAKN 115
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SYNJA (50S ribosomal protein L20 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplT PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24 Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R +K+I KLAKGFRG R A ++V KAL+ +YRDRR KKRD R LWI RINA TR G+ Y F+ GL K NIQLNRK+L+ L+ +P +F +V+ +R A Sbjct: 10 RKRRKKILKLAKGFRGAGSKLFRTANQQVMKALRSAYRDRRRKKRDFRRLWIARINAATRAQGLRYSEFIDGLKKGNIQLNRKMLARLAFLDPEAFTQVVEAARQA 115
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_CYTH3 (50S ribosomal protein L20 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rplT PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24 Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R +K+I KLAKG+ GR KN +A+ VE+ ++Y R+ KKR R LWIQRINAGTRQHG++Y F+ L K NI+LNRKVL++L+M++P +FKA+V+ Sbjct: 11 RERRKKILKLAKGYFGRRKNVWTVAKNAVERGKVFAYIGRKQKKRHFRGLWIQRINAGTRQHGLSYSQFIGALDKANIKLNRKVLADLAMNDPEAFKAVVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SPHAL (50S ribosomal protein L20 OS=Sphingopyxis alaskensis GN=rplT PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24 Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = -3 Query: 314 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 637 R K I AKG+ GR KN IRIAR+ VEKA QY+YRDR+ KKR R+LWIQRINA R G+ Y FMHG+ I+L+RKV+++L+M+E F A+V ++ A P Sbjct: 11 RAKHKRILDQAKGYYGRRKNTIRIARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYSQFMHGVKLAGIELDRKVMADLAMNEGGVFTAIVAQAKAALP 118
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_PELUB (50S ribosomal protein L20 OS=Pelagibacter ubique GN=rplT PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24 Identity = 51/102 (50.00%), Postives = 76/102 (74.51%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ K KG GR K+ IR+A++ +EKA+QY+YRDRR KKR+ +SLWIQRINAG R G+ Y F++GL K I+L+RK+L+E++ P +FK +V +++A Sbjct: 15 KKVLKAVKGQWGRRKSTIRVAKQAMEKAMQYAYRDRRTKKREFKSLWIQRINAGVRSEGITYSKFINGLTKCGIKLDRKILAEIAYDSPEAFKTIVQKAQSA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIMF (50S ribosomal protein L20 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplT PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24 Identity = 52/106 (49.06%), Postives = 80/106 (75.47%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R ++IF LAKG+RGR KN R+A++ V KA QY+YRDRR +KR R LWI RINAG R++G++Y FM+GL + +I+++RKVL++L++ + +F LV+ +++A Sbjct: 11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKSA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METPP (50S ribosomal protein L20 OS=Methylibium petroleiphilum (strain PM1) GN=rplT PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24 Identity = 52/101 (51.49%), Postives = 75/101 (74.26%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R K++ +LAKGFRGR KN RIA++ V KA QY+YRDRRN+KR R LWI RINA +R HG+ Y F+ G+ K I ++RK+L+EL++++P +F ++V+ Sbjct: 11 RARHKKVLELAKGFRGRRKNVYRIAKQAVMKAGQYAYRDRRNRKRVFRRLWIARINAASRSHGITYSRFIAGIKKAAIDIDRKMLAELAVNDPAAFGSIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRAJA (50S ribosomal protein L20 OS=Bradyrhizobium japonicum GN=rplT PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24 Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+++K AKGF GR KN IR A+ VEKA QY++RDR+ KKR R+LWIQR+NA R G+ Y F+ GL K I ++RKVLS+L+++EP SF+A+ + ++ A Sbjct: 15 KKVYKAAKGFYGRRKNTIRAAKPAVEKAQQYAFRDRKRKKRTFRALWIQRLNAAVRPFGLTYSRFIDGLAKSGITVDRKVLSDLAINEPASFQAIAEKAKAA 116 The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bpback to top |