CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHIME (50S ribosomal protein L20 OS=Rhizobium meliloti GN=rplT PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+  K AKGF GR KN IR A+  V+++ Q++YRDR+  KR+ R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV+ S+ A
Sbjct:   15 KKTLKAAKGFYGRRKNTIRAAKAAVDRSKQFAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEASKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIMB (50S ribosomal protein L20 OS=Neisseria meningitidis serogroup B GN=rplT PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 53/106 (50.00%), Postives = 80/106 (75.47%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   ++IF LAKG+RGR KN  R+A++ V KA QY+YRDRR +KR  R LWI RINAGTR++G++Y  FM+GL + +I+++RKVL++L++ +  +F  LV+ ++ A
Sbjct:   11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGTRENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_DEIDV (50S ribosomal protein L20 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rplT PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = -3
Query:  323 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRN 637
            R   K++ K AKGF G      R A + +  A  Y YRDRRNKKRD R LW+QRINAG R HG+NY  F+ GL +  + LNRKVL++++  EP +FKALVD ++N
Sbjct:   11 RRRHKKVLKRAKGFEGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWVQRINAGARLHGMNYSTFIGGLKRAGVDLNRKVLADIAAREPEAFKALVDAAKN 115          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SYNJA (50S ribosomal protein L20 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplT PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R  +K+I KLAKGFRG      R A ++V KAL+ +YRDRR KKRD R LWI RINA TR  G+ Y  F+ GL K NIQLNRK+L+ L+  +P +F  +V+ +R A
Sbjct:   10 RKRRKKILKLAKGFRGAGSKLFRTANQQVMKALRSAYRDRRRKKRDFRRLWIARINAATRAQGLRYSEFIDGLKKGNIQLNRKMLARLAFLDPEAFTQVVEAARQA 115          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_CYTH3 (50S ribosomal protein L20 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rplT PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R  +K+I KLAKG+ GR KN   +A+  VE+   ++Y  R+ KKR  R LWIQRINAGTRQHG++Y  F+  L K NI+LNRKVL++L+M++P +FKA+V+
Sbjct:   11 RERRKKILKLAKGYFGRRKNVWTVAKNAVERGKVFAYIGRKQKKRHFRGLWIQRINAGTRQHGLSYSQFIGALDKANIKLNRKVLADLAMNDPEAFKAVVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SPHAL (50S ribosomal protein L20 OS=Sphingopyxis alaskensis GN=rplT PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = -3
Query:  314 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 637
            R   K I   AKG+ GR KN IRIAR+ VEKA QY+YRDR+ KKR  R+LWIQRINA  R  G+ Y  FMHG+    I+L+RKV+++L+M+E   F A+V  ++ A P
Sbjct:   11 RAKHKRILDQAKGYYGRRKNTIRIARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYSQFMHGVKLAGIELDRKVMADLAMNEGGVFTAIVAQAKAALP 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_PELUB (50S ribosomal protein L20 OS=Pelagibacter ubique GN=rplT PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 51/102 (50.00%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ K  KG  GR K+ IR+A++ +EKA+QY+YRDRR KKR+ +SLWIQRINAG R  G+ Y  F++GL K  I+L+RK+L+E++   P +FK +V  +++A
Sbjct:   15 KKVLKAVKGQWGRRKSTIRVAKQAMEKAMQYAYRDRRTKKREFKSLWIQRINAGVRSEGITYSKFINGLTKCGIKLDRKILAEIAYDSPEAFKTIVQKAQSA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIMF (50S ribosomal protein L20 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplT PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 52/106 (49.06%), Postives = 80/106 (75.47%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   ++IF LAKG+RGR KN  R+A++ V KA QY+YRDRR +KR  R LWI RINAG R++G++Y  FM+GL + +I+++RKVL++L++ +  +F  LV+ +++A
Sbjct:   11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKSA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METPP (50S ribosomal protein L20 OS=Methylibium petroleiphilum (strain PM1) GN=rplT PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 52/101 (51.49%), Postives = 75/101 (74.26%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++ +LAKGFRGR KN  RIA++ V KA QY+YRDRRN+KR  R LWI RINA +R HG+ Y  F+ G+ K  I ++RK+L+EL++++P +F ++V+
Sbjct:   11 RARHKKVLELAKGFRGRRKNVYRIAKQAVMKAGQYAYRDRRNRKRVFRRLWIARINAASRSHGITYSRFIAGIKKAAIDIDRKMLAELAVNDPAAFGSIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRAJA (50S ribosomal protein L20 OS=Bradyrhizobium japonicum GN=rplT PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+++K AKGF GR KN IR A+  VEKA QY++RDR+ KKR  R+LWIQR+NA  R  G+ Y  F+ GL K  I ++RKVLS+L+++EP SF+A+ + ++ A
Sbjct:   15 KKVYKAAKGFYGRRKNTIRAAKPAVEKAQQYAFRDRKRKKRTFRALWIQRLNAAVRPFGLTYSRFIDGLAKSGITVDRKVLSDLAINEPASFQAIAEKAKAA 116          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_RHIME8.032e-2551.9650S ribosomal protein L20 OS=Rhizobium meliloti GN... [more]
RL20_NEIMB8.032e-2550.0050S ribosomal protein L20 OS=Neisseria meningitidi... [more]
RL20_DEIDV8.032e-2551.4350S ribosomal protein L20 OS=Deinococcus deserti (... [more]
RL20_SYNJA1.049e-2452.8350S ribosomal protein L20 OS=Synechococcus sp. (st... [more]
RL20_CYTH31.049e-2453.4750S ribosomal protein L20 OS=Cytophaga hutchinsoni... [more]
RL20_SPHAL1.370e-2452.7850S ribosomal protein L20 OS=Sphingopyxis alaskens... [more]
RL20_PELUB1.370e-2450.0050S ribosomal protein L20 OS=Pelagibacter ubique G... [more]
RL20_NEIMF1.370e-2449.0650S ribosomal protein L20 OS=Neisseria meningitidi... [more]
RL20_METPP1.370e-2451.4950S ribosomal protein L20 OS=Methylibium petroleip... [more]
RL20_BRAJA1.370e-2451.9650S ribosomal protein L20 OS=Bradyrhizobium japoni... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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