CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BARHE (50S ribosomal protein L20 OS=Bartonella henselae GN=rplT PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 52/102 (50.98%), Postives = 75/102 (73.53%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ K A+GF GR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R  G+ YG F+ GL K  I+++RKVLS++++HE  +F ALV  ++ A
Sbjct:   15 KKVLKQAEGFYGRRKNTIRAAKAAVDRSKQYAYRDRKNRKRTFRALWIQRINAAVRAEGLTYGRFIDGLSKAGIEIDRKVLSDIAIHESAAFSALVASAKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_AGRT5 (50S ribosomal protein L20 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplT PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 53/106 (50.00%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R    +  K AKGF GR KN IR A+  V+++ QY+YRDR+  KR+ R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV+ ++ A
Sbjct:   11 RAKHTKTLKAAKGFYGRRKNTIRAAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVRESGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEAAKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_XANP2 (50S ribosomal protein L20 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 55/104 (52.88%), Postives = 79/104 (75.96%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR--QHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++F+ AKGF GR KN IR A+  VE+++QY+YRDR+ KKR+ R+LWIQRINAG R     + Y  F+ GL K  I+++RKVLS++++HEP +FKALV+ ++ A
Sbjct:   15 KKVFEAAKGFYGRRKNTIRAAKSAVERSMQYAYRDRKVKKRNFRALWIQRINAGVRALDLDLTYSRFIDGLGKAGIEVDRKVLSDIAIHEPDAFKALVEKAKAA 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOPT (50S ribosomal protein L20 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 52/102 (50.98%), Postives = 78/102 (76.47%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+++KLAKG+RGR KN IR A+  V+KA QY++RDR+ KKR  R+LWIQR+NA  R  G+ Y  F++GL K  I ++RKVLS+L+++EP +F+A+ + ++ A
Sbjct:   15 KKVYKLAKGYRGRRKNTIRTAKAAVDKAGQYAFRDRKRKKRTFRALWIQRLNAAVRPFGMTYSVFINGLSKSGIVVDRKVLSDLAINEPAAFQAIAEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOPA (50S ribosomal protein L20 OS=Rhodopseudomonas palustris GN=rplT PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 52/102 (50.98%), Postives = 78/102 (76.47%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+++KLAKG+RGR KN IR A+  V+KA QY++RDR+ KKR  R+LWIQR+NA  R  G+ Y  F++GL K  I ++RKVLS+L+++EP +F+A+ + ++ A
Sbjct:   15 KKVYKLAKGYRGRRKNTIRTAKAAVDKAGQYAFRDRKRKKRTFRALWIQRLNAAVRPFGMTYSVFINGLSKSGIVVDRKVLSDLAINEPAAFQAIAEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOFD (50S ribosomal protein L20 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++  LAKGFRGR  N  R+A+E V KA QY+YRDRR KKR  R LWI RINA  RQ G+ Y  F +GL K NI+++RKVLS++++H+  +F ++VD
Sbjct:   11 RARHKKVLALAKGFRGRRGNVYRVAKEAVMKAGQYAYRDRRTKKRVFRQLWIARINAAARQCGMTYSQFANGLKKANIEIDRKVLSDIAVHDMAAFASIVD 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_FLAPJ (50S ribosomal protein L20 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = -3
Query:  335 ERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 640
            +R  +K+I K AKGF GR KN   +A+  VEKA+ Y+YRDR+  KR+ R+LWIQRINAG R  G++Y  FM  + K NI+LNRKVL++L+M+ P +FK +++
Sbjct:   10 KRARRKKIMKQAKGFFGRRKNVWTVAKNAVEKAMCYAYRDRKVNKRNFRALWIQRINAGARLEGMSYSQFMGKVKKHNIELNRKVLADLAMNHPVAFKTILN 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_FLAJ1 (50S ribosomal protein L20 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = -3
Query:  335 ERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 640
            +R  +K+I K AKGF GR KN   +A+  VEKA+ Y+YRDR+  KR+ RSLWIQRINAG R  G++Y  FM  +    I+LNRKVL++L+M+ P +FKA+++
Sbjct:   10 KRARRKKIMKQAKGFFGRRKNVWTVAKNAVEKAMSYAYRDRKQNKRNFRSLWIQRINAGARLEGMSYSQFMGKVKANGIELNRKVLADLAMNHPEAFKAILN 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_DESOH (50S ribosomal protein L20 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = -3
Query:  329 LRIKEK-RERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDIS 661
            +RIK   + R  +K+I KLAKGFRG      + A+  V+KAL Y+YRDR+ +KRD R LWI RINA  R H ++Y  FMHGL K  ++L+RKVL+EL++ +P  F  +V ++
Sbjct:    1 MRIKRGFKARHRRKKILKLAKGFRGGHSKLFKTAKNTVDKALGYAYRDRKQRKRDFRRLWIARINAAVRMHSLSYSRFMHGLKKAGVELDRKVLAELAISDPSGFSKVVAVA 112          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BARQU (50S ribosomal protein L20 OS=Bartonella quintana GN=rplT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = -3
Query:  311 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV-----------DISRNAFPG 625
            K++ K A+GF GR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R  G+ YG F+ GL K  I+++RKVLS++++HE  +F ALV           D + NAF G
Sbjct:   15 KKVLKQAEGFYGRRKNTIRAAKAAVDRSKQYAYRDRKNRKRIFRALWIQRINAAVRAEGLTYGRFIDGLSKAGIEIDRKVLSDIAVHESAAFSALVASAKKALEYLRDTTSNAFEG 130          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_BARHE1.370e-2450.9850S ribosomal protein L20 OS=Bartonella henselae G... [more]
RL20_AGRT51.370e-2450.0050S ribosomal protein L20 OS=Agrobacterium tumefac... [more]
RL20_XANP21.789e-2452.8850S ribosomal protein L20 OS=Xanthobacter autotrop... [more]
RL20_RHOPT1.789e-2450.9850S ribosomal protein L20 OS=Rhodopseudomonas palu... [more]
RL20_RHOPA1.789e-2450.9850S ribosomal protein L20 OS=Rhodopseudomonas palu... [more]
RL20_RHOFD1.789e-2453.4750S ribosomal protein L20 OS=Rhodoferax ferrireduc... [more]
RL20_FLAPJ1.789e-2451.9650S ribosomal protein L20 OS=Flavobacterium psychr... [more]
RL20_FLAJ11.789e-2451.9650S ribosomal protein L20 OS=Flavobacterium johnso... [more]
RL20_DESOH1.789e-2448.2150S ribosomal protein L20 OS=Desulfococcus oleovor... [more]
RL20_BARQU1.789e-2448.2850S ribosomal protein L20 OS=Bartonella quintana G... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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