CX298468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BARHE (50S ribosomal protein L20 OS=Bartonella henselae GN=rplT PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24 Identity = 52/102 (50.98%), Postives = 75/102 (73.53%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ K A+GF GR KN IR A+ V+++ QY+YRDR+N+KR R+LWIQRINA R G+ YG F+ GL K I+++RKVLS++++HE +F ALV ++ A Sbjct: 15 KKVLKQAEGFYGRRKNTIRAAKAAVDRSKQYAYRDRKNRKRTFRALWIQRINAAVRAEGLTYGRFIDGLSKAGIEIDRKVLSDIAIHESAAFSALVASAKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_AGRT5 (50S ribosomal protein L20 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplT PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24 Identity = 53/106 (50.00%), Postives = 76/106 (71.70%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R + K AKGF GR KN IR A+ V+++ QY+YRDR+ KR+ R+LWIQRINA R+ G+ YG F+ GL K I+++RKVLS++++HEP +F ALV+ ++ A Sbjct: 11 RAKHTKTLKAAKGFYGRRKNTIRAAKAAVDRSKQYAYRDRKVNKRNFRALWIQRINAAVRESGLTYGRFIDGLNKAGIEVDRKVLSDMAIHEPAAFGALVEAAKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_XANP2 (50S ribosomal protein L20 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplT PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 55/104 (52.88%), Postives = 79/104 (75.96%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR--QHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++F+ AKGF GR KN IR A+ VE+++QY+YRDR+ KKR+ R+LWIQRINAG R + Y F+ GL K I+++RKVLS++++HEP +FKALV+ ++ A Sbjct: 15 KKVFEAAKGFYGRRKNTIRAAKSAVERSMQYAYRDRKVKKRNFRALWIQRINAGVRALDLDLTYSRFIDGLGKAGIEVDRKVLSDIAIHEPDAFKALVEKAKAA 118
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOPT (50S ribosomal protein L20 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplT PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 52/102 (50.98%), Postives = 78/102 (76.47%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+++KLAKG+RGR KN IR A+ V+KA QY++RDR+ KKR R+LWIQR+NA R G+ Y F++GL K I ++RKVLS+L+++EP +F+A+ + ++ A Sbjct: 15 KKVYKLAKGYRGRRKNTIRTAKAAVDKAGQYAFRDRKRKKRTFRALWIQRLNAAVRPFGMTYSVFINGLSKSGIVVDRKVLSDLAINEPAAFQAIAEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOPA (50S ribosomal protein L20 OS=Rhodopseudomonas palustris GN=rplT PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 52/102 (50.98%), Postives = 78/102 (76.47%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+++KLAKG+RGR KN IR A+ V+KA QY++RDR+ KKR R+LWIQR+NA R G+ Y F++GL K I ++RKVLS+L+++EP +F+A+ + ++ A Sbjct: 15 KKVYKLAKGYRGRRKNTIRTAKAAVDKAGQYAFRDRKRKKRTFRALWIQRLNAAVRPFGMTYSVFINGLSKSGIVVDRKVLSDLAINEPAAFQAIAEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOFD (50S ribosomal protein L20 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplT PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R K++ LAKGFRGR N R+A+E V KA QY+YRDRR KKR R LWI RINA RQ G+ Y F +GL K NI+++RKVLS++++H+ +F ++VD Sbjct: 11 RARHKKVLALAKGFRGRRGNVYRVAKEAVMKAGQYAYRDRRTKKRVFRQLWIARINAAARQCGMTYSQFANGLKKANIEIDRKVLSDIAVHDMAAFASIVD 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_FLAPJ (50S ribosomal protein L20 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rplT PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = -3 Query: 335 ERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 640 +R +K+I K AKGF GR KN +A+ VEKA+ Y+YRDR+ KR+ R+LWIQRINAG R G++Y FM + K NI+LNRKVL++L+M+ P +FK +++ Sbjct: 10 KRARRKKIMKQAKGFFGRRKNVWTVAKNAVEKAMCYAYRDRKVNKRNFRALWIQRINAGARLEGMSYSQFMGKVKKHNIELNRKVLADLAMNHPVAFKTILN 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_FLAJ1 (50S ribosomal protein L20 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rplT PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = -3 Query: 335 ERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 640 +R +K+I K AKGF GR KN +A+ VEKA+ Y+YRDR+ KR+ RSLWIQRINAG R G++Y FM + I+LNRKVL++L+M+ P +FKA+++ Sbjct: 10 KRARRKKIMKQAKGFFGRRKNVWTVAKNAVEKAMSYAYRDRKQNKRNFRSLWIQRINAGARLEGMSYSQFMGKVKANGIELNRKVLADLAMNHPEAFKAILN 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_DESOH (50S ribosomal protein L20 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplT PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = -3 Query: 329 LRIKEK-RERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDIS 661 +RIK + R +K+I KLAKGFRG + A+ V+KAL Y+YRDR+ +KRD R LWI RINA R H ++Y FMHGL K ++L+RKVL+EL++ +P F +V ++ Sbjct: 1 MRIKRGFKARHRRKKILKLAKGFRGGHSKLFKTAKNTVDKALGYAYRDRKQRKRDFRRLWIARINAAVRMHSLSYSRFMHGLKKAGVELDRKVLAELAISDPSGFSKVVAVA 112
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BARQU (50S ribosomal protein L20 OS=Bartonella quintana GN=rplT PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24 Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = -3 Query: 311 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV-----------DISRNAFPG 625 K++ K A+GF GR KN IR A+ V+++ QY+YRDR+N+KR R+LWIQRINA R G+ YG F+ GL K I+++RKVLS++++HE +F ALV D + NAF G Sbjct: 15 KKVLKQAEGFYGRRKNTIRAAKAAVDRSKQYAYRDRKNRKRIFRALWIQRINAAVRAEGLTYGRFIDGLSKAGIEIDRKVLSDIAVHESAAFSALVASAKKALEYLRDTTSNAFEG 130 The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bpback to top |