CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ANAMM (50S ribosomal protein L20 OS=Anaplasma marginale (strain St. Maries) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = -3
Query:  338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637
            R   K++  LAKG+RGR+KNC R A +R+EKAL Y+YRDRRN+KRD R LWI RINA  RQ G+ Y   M G+    I+LNRK+L+E+++++  +F+ +V
Sbjct:   11 RARHKKVVALAKGYRGRSKNCYRAALQRLEKALVYAYRDRRNRKRDFRRLWIVRINAAARQWGIKYSQLMKGMALCGIELNRKMLAEMAVNDKAAFEKVV 110          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ANAMF (50S ribosomal protein L20 OS=Anaplasma marginale (strain Florida) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = -3
Query:  338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637
            R   K++  LAKG+RGR+KNC R A +R+EKAL Y+YRDRRN+KRD R LWI RINA  RQ G+ Y   M G+    I+LNRK+L+E+++++  +F+ +V
Sbjct:   11 RARHKKVVALAKGYRGRSKNCYRAALQRLEKALVYAYRDRRNRKRDFRRLWIVRINAAARQWGIKYSQLMKGMALCGIELNRKMLAEMAVNDKAAFEKVV 110          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SYNJB (50S ribosomal protein L20 OS=Synechococcus sp. GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R  +K+I KLAKGFRG      R A ++V KAL+ +YRDRR KKRD R LWI RINA TR  G+ Y  F+ GL K NIQLNRK+L+ L+  +P +F  +V+ +R +
Sbjct:   10 RKRRKKILKLAKGFRGAGSKLFRTANQQVMKALRSAYRDRRRKKRDFRRLWITRINAATRAQGLRYHEFIDGLKKANIQLNRKMLARLAFLDPEAFTQVVEAARQS 115          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SYNFM (50S ribosomal protein L20 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = -3
Query:  320 KEKRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 652
            K  + R  +K+I KLAKG+RG     IR A E V++AL+++YRDR+ +KR  RSLWI RINA  R+H ++Y  FMH L K NI ++RK L+ L++++P +F  L  I++ A
Sbjct:    6 KAVKSRERRKKILKLAKGYRGGRGKLIRSASETVDRALKFAYRDRKTRKRQFRSLWIMRINAAAREHDLSYSRFMHALKKANIDMDRKALAHLAVNDPAAFAKLARIAKEA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOPS (50S ribosomal protein L20 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+++KLAKGFRGR KN IR A+  V+KA QY++RDR+ KKR  R+LWIQRINA  R  G+ Y  F++GL K  + ++RKVLS+L++ EP +F+A+ + ++ A
Sbjct:   15 KKVYKLAKGFRGRRKNTIRAAKAAVDKAGQYAFRDRKRKKRTFRALWIQRINAAVRPLGMTYSVFINGLAKSGVIVDRKVLSDLAITEPAAFQAIAEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOPB (50S ribosomal protein L20 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+++KLAKGFRGR KN IR A+  V+KA QY++RDR+ KKR  R+LWIQRINA  R  G+ Y  F++GL K  + ++RKVLS+L++ EP +F A+ + ++ A
Sbjct:   15 KKVYKLAKGFRGRRKNTIRTAKAAVDKAGQYAFRDRKRKKRTFRALWIQRINAAVRPLGMTYSVFINGLAKSGVMVDRKVLSDLAITEPAAFLAIAEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_POLNA (50S ribosomal protein L20 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++  LAKGFRGR  N  RIA+E V KA QY+YRDRRNKKR  R LWI RINA +R  G+ Y  F +GL K  I+++RKVLS++++H+  +F A+V+
Sbjct:   11 RARHKKVLALAKGFRGRRGNVFRIAKEAVMKAGQYAYRDRRNKKRVFRRLWIARINAASRSFGLTYSQFANGLKKAGIEIDRKVLSDMAIHDSAAFGAIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIMA (50S ribosomal protein L20 OS=Neisseria meningitidis serogroup A GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   ++IF LAKG+RGR KN  R+A++ V KA QY+YRDRR +KR  R LWI RINAG R++G++Y  FM+GL + +I+++RKVL++L++ +  +F  LV+ ++ A
Sbjct:   11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIM0 (50S ribosomal protein L20 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   ++IF LAKG+RGR KN  R+A++ V KA QY+YRDRR +KR  R LWI RINAG R++G++Y  FM+GL + +I+++RKVL++L++ +  +F  LV+ ++ A
Sbjct:   11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIG2 (50S ribosomal protein L20 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   ++IF LAKG+RGR KN  R+A++ V KA QY+YRDRR +KR  R LWI RINAG R++G++Y  FM+GL + +I+++RKVL++L++ +  +F  LV+ ++ A
Sbjct:   11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAA 116          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_ANAMM2.337e-2452.0050S ribosomal protein L20 OS=Anaplasma marginale (... [more]
RL20_ANAMF2.337e-2452.0050S ribosomal protein L20 OS=Anaplasma marginale (... [more]
RL20_SYNJB3.052e-2451.8950S ribosomal protein L20 OS=Synechococcus sp. GN=... [more]
RL20_SYNFM3.052e-2446.8550S ribosomal protein L20 OS=Syntrophobacter fumar... [more]
RL20_RHOPS3.052e-2451.9650S ribosomal protein L20 OS=Rhodopseudomonas palu... [more]
RL20_RHOPB3.052e-2451.9650S ribosomal protein L20 OS=Rhodopseudomonas palu... [more]
RL20_POLNA3.052e-2453.4750S ribosomal protein L20 OS=Polaromonas naphthale... [more]
RL20_NEIMA3.052e-2449.0650S ribosomal protein L20 OS=Neisseria meningitidi... [more]
RL20_NEIM03.052e-2449.0650S ribosomal protein L20 OS=Neisseria meningitidi... [more]
RL20_NEIG23.052e-2449.0650S ribosomal protein L20 OS=Neisseria gonorrhoeae... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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