CX298468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ANAMM (50S ribosomal protein L20 OS=Anaplasma marginale (strain St. Maries) GN=rplT PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24 Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = -3 Query: 338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637 R K++ LAKG+RGR+KNC R A +R+EKAL Y+YRDRRN+KRD R LWI RINA RQ G+ Y M G+ I+LNRK+L+E+++++ +F+ +V Sbjct: 11 RARHKKVVALAKGYRGRSKNCYRAALQRLEKALVYAYRDRRNRKRDFRRLWIVRINAAARQWGIKYSQLMKGMALCGIELNRKMLAEMAVNDKAAFEKVV 110
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ANAMF (50S ribosomal protein L20 OS=Anaplasma marginale (strain Florida) GN=rplT PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24 Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = -3 Query: 338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637 R K++ LAKG+RGR+KNC R A +R+EKAL Y+YRDRRN+KRD R LWI RINA RQ G+ Y M G+ I+LNRK+L+E+++++ +F+ +V Sbjct: 11 RARHKKVVALAKGYRGRSKNCYRAALQRLEKALVYAYRDRRNRKRDFRRLWIVRINAAARQWGIKYSQLMKGMALCGIELNRKMLAEMAVNDKAAFEKVV 110
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SYNJB (50S ribosomal protein L20 OS=Synechococcus sp. GN=rplT PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R +K+I KLAKGFRG R A ++V KAL+ +YRDRR KKRD R LWI RINA TR G+ Y F+ GL K NIQLNRK+L+ L+ +P +F +V+ +R + Sbjct: 10 RKRRKKILKLAKGFRGAGSKLFRTANQQVMKALRSAYRDRRRKKRDFRRLWITRINAATRAQGLRYHEFIDGLKKANIQLNRKMLARLAFLDPEAFTQVVEAARQS 115
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SYNFM (50S ribosomal protein L20 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplT PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = -3 Query: 320 KEKRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 652 K + R +K+I KLAKG+RG IR A E V++AL+++YRDR+ +KR RSLWI RINA R+H ++Y FMH L K NI ++RK L+ L++++P +F L I++ A Sbjct: 6 KAVKSRERRKKILKLAKGYRGGRGKLIRSASETVDRALKFAYRDRKTRKRQFRSLWIMRINAAAREHDLSYSRFMHALKKANIDMDRKALAHLAVNDPAAFAKLARIAKEA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOPS (50S ribosomal protein L20 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplT PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 53/102 (51.96%), Postives = 77/102 (75.49%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+++KLAKGFRGR KN IR A+ V+KA QY++RDR+ KKR R+LWIQRINA R G+ Y F++GL K + ++RKVLS+L++ EP +F+A+ + ++ A Sbjct: 15 KKVYKLAKGFRGRRKNTIRAAKAAVDKAGQYAFRDRKRKKRTFRALWIQRINAAVRPLGMTYSVFINGLAKSGVIVDRKVLSDLAITEPAAFQAIAEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOPB (50S ribosomal protein L20 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplT PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+++KLAKGFRGR KN IR A+ V+KA QY++RDR+ KKR R+LWIQRINA R G+ Y F++GL K + ++RKVLS+L++ EP +F A+ + ++ A Sbjct: 15 KKVYKLAKGFRGRRKNTIRTAKAAVDKAGQYAFRDRKRKKRTFRALWIQRINAAVRPLGMTYSVFINGLAKSGVMVDRKVLSDLAITEPAAFLAIAEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_POLNA (50S ribosomal protein L20 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rplT PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R K++ LAKGFRGR N RIA+E V KA QY+YRDRRNKKR R LWI RINA +R G+ Y F +GL K I+++RKVLS++++H+ +F A+V+ Sbjct: 11 RARHKKVLALAKGFRGRRGNVFRIAKEAVMKAGQYAYRDRRNKKRVFRRLWIARINAASRSFGLTYSQFANGLKKAGIEIDRKVLSDMAIHDSAAFGAIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIMA (50S ribosomal protein L20 OS=Neisseria meningitidis serogroup A GN=rplT PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R ++IF LAKG+RGR KN R+A++ V KA QY+YRDRR +KR R LWI RINAG R++G++Y FM+GL + +I+++RKVL++L++ + +F LV+ ++ A Sbjct: 11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIM0 (50S ribosomal protein L20 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplT PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R ++IF LAKG+RGR KN R+A++ V KA QY+YRDRR +KR R LWI RINAG R++G++Y FM+GL + +I+++RKVL++L++ + +F LV+ ++ A Sbjct: 11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIG2 (50S ribosomal protein L20 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplT PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R ++IF LAKG+RGR KN R+A++ V KA QY+YRDRR +KR R LWI RINAG R++G++Y FM+GL + +I+++RKVL++L++ + +F LV+ ++ A Sbjct: 11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAA 116 The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bpback to top |