CX298691

Overview
NameCX298691
Unique NameCX298691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_MYCPA (Transaldolase OS=Mycobacterium paratuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 57/133 (42.86%), Postives = 80/133 (60.15%), Query Frame = 3
Query:    6 AALAYQLYQKKFSG-PRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANS 398
            A LAY  YQ+ F G  R+ AL   GA+ QR LWAST VKNP Y DTLYV  L+ P+TV+TMP++ + A  DHG +   T+     +A+ ++  L  +G+D   V   LE EGV+ F  S+  L++  Q++  S
Sbjct:  238 ARLAYAAYQEVFEGGQRYQALKADGARVQRPLWASTGVKNPDYSDTLYVTELVAPNTVNTMPEKTIDAVADHGVIRGDTVTGTGPDAQRVFDELAAVGVDLPDVFVVLENEGVEKFVDSWTELMEETQKQLGS 370          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_MYCTU (Transaldolase OS=Mycobacterium tuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.779e-20
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 3
Query:    6 AALAYQLYQKKFS-GPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLL 371
            A LAY  Y++ F    R+ +L   GA+ QR LWAST VKNP Y DTLYV  L+ P TV+TMP++ + A  DHG +   T+    S+A+ ++  L  +GID   V   LE EGV  F+ S++ LL
Sbjct:  238 ARLAYATYREVFEDSDRYRSLKVDGARVQRPLWASTGVKNPDYSDTLYVTELVAPHTVNTMPEKTIDAVADHGVIQGDTVTGTASDAQAVFDQLGAIGIDLTDVFAVLEEEGVRKFEASWNELL 361          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_MYCTA (Transaldolase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tal PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.779e-20
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 3
Query:    6 AALAYQLYQKKFS-GPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLL 371
            A LAY  Y++ F    R+ +L   GA+ QR LWAST VKNP Y DTLYV  L+ P TV+TMP++ + A  DHG +   T+    S+A+ ++  L  +GID   V   LE EGV  F+ S++ LL
Sbjct:  238 ARLAYATYREVFEDSDRYRSLKVDGARVQRPLWASTGVKNPDYSDTLYVTELVAPHTVNTMPEKTIDAVADHGVIQGDTVTGTASDAQAVFDQLGAIGIDLTDVFAVLEEEGVRKFEASWNELL 361          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_MYCBT (Transaldolase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tal PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.779e-20
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 3
Query:    6 AALAYQLYQKKFS-GPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLL 371
            A LAY  Y++ F    R+ +L   GA+ QR LWAST VKNP Y DTLYV  L+ P TV+TMP++ + A  DHG +   T+    S+A+ ++  L  +GID   V   LE EGV  F+ S++ LL
Sbjct:  238 ARLAYAAYREVFEDSDRYRSLKVDGARVQRPLWASTGVKNPDYSDTLYVTELVAPHTVNTMPEKTIDAVADHGVIQGDTVTGTASDAQAVFDQLGAIGIDLTDVFAVLEEEGVRKFEASWNELL 361          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_MYCBP (Transaldolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tal PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.779e-20
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 3
Query:    6 AALAYQLYQKKFS-GPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLL 371
            A LAY  Y++ F    R+ +L   GA+ QR LWAST VKNP Y DTLYV  L+ P TV+TMP++ + A  DHG +   T+    S+A+ ++  L  +GID   V   LE EGV  F+ S++ LL
Sbjct:  238 ARLAYAAYREVFEDSDRYRSLKVDGARVQRPLWASTGVKNPDYSDTLYVTELVAPHTVNTMPEKTIDAVADHGVIQGDTVTGTASDAQAVFDQLGAIGIDLTDVFAVLEEEGVRKFEASWNELL 361          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_MYCBO (Transaldolase OS=Mycobacterium bovis GN=tal PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.779e-20
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 3
Query:    6 AALAYQLYQKKFS-GPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLL 371
            A LAY  Y++ F    R+ +L   GA+ QR LWAST VKNP Y DTLYV  L+ P TV+TMP++ + A  DHG +   T+    S+A+ ++  L  +GID   V   LE EGV  F+ S++ LL
Sbjct:  238 ARLAYAAYREVFEDSDRYRSLKVDGARVQRPLWASTGVKNPDYSDTLYVTELVAPHTVNTMPEKTIDAVADHGVIQGDTVTGTASDAQAVFDQLGAIGIDLTDVFAVLEEEGVRKFEASWNELL 361          
The following BLAST results are available for this feature:
BLAST of CX298691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TAL_MYCPA7.223e-2242.86Transaldolase OS=Mycobacterium paratuberculosis GN... [more]
TAL_MYCTU1.779e-2044.35Transaldolase OS=Mycobacterium tuberculosis GN=tal... [more]
TAL_MYCTA1.779e-2044.35Transaldolase OS=Mycobacterium tuberculosis (strai... [more]
TAL_MYCBT1.779e-2044.35Transaldolase OS=Mycobacterium bovis (strain BCG /... [more]
TAL_MYCBP1.779e-2044.35Transaldolase OS=Mycobacterium bovis (strain BCG /... [more]
TAL_MYCBO1.779e-2044.35Transaldolase OS=Mycobacterium bovis GN=tal PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionC06014E04SK RindPdig24 Citrus clementina cDNA clone C06014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298691 ID=CX298691; Name=CX298691; organism=Citrus clementina; type=EST; length=658bp
GAGGGGCAGCTCTAGCATACCAGCTGTACCAGAAGAAGTTCTCTGGTCCA
AGATGGGACGCTCTTGTGAAGAAAGGTGCAAAGAAGCAGAGACTTCTGTG
GGCCTCAACCAGTGTAAAGAATCCTGCCTACCCTGACACTCTATATGTTG
CTCCTCTCATTGGACCTGATACGGTTTCAACCATGCCAGACCAAGCTCTC
CAAGCATTTGTTGATCATGGTGCAGTTTCAAGAACAATTGACTTGAATGT
TTCTGAGGCTGAAGGCATTTACAGTGCACTGGAGAAGTTGGGAATTGATT
GGAACTACGTTGGCACTCAACTCGAACTTGAAGGGGTAGATTCTTTCAAG
AAGAGCTTTGATAGTCTGCTGGATACCCTGCAAGAGAAGGCAAACTCTCT
CAAGCTGGTTAGTCTGTAAACTGTAATTGTTTTTTTTTTTGCTTAAAACC
CACTTGGCGCAGCTGCGCTGTGCCCTCACCTATGTTTTTGGAGAAATTTT
CACCAAGAATGCAGCGCAGCTGCCCCAATCGGACTCTTATTTTCCGTTGT
GACTGAAATAAATCTAGTGGGTTTTCAATCCCCTTCTCATAATCTGTATG
ACAATAATTATTATGTATGATAAGTGTTTTAGTGCCAAAAAAAAAAAAAA
AAAAAAAA
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