CX299051

Overview
NameCX299051
Unique NameCX299051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPE_RHIME (Anthranilate synthase OS=Rhizobium meliloti GN=trpE(G) PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVR 361
            +P+FGVC+GLQ + EA+GG + R     MHGK S +   E G   + +GL    T GRYHS+  +  + P + + +TA +EDG IM   H K + +  VQFHPESI+T  G   +R
Sbjct:  601 LPIFGVCLGLQALAEAYGGDL-RQLAIPMHGKPSRIRVLEPGI--VFSGLGKEVTVGRYHSIFADPSNLPREFV-ITAESEDGTIMGIEHSK-EPVAAVQFHPESIMTLGGDAGMR 711          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_HALSA (Anthranilate synthase component II OS=Halobacterium salinarium GN=trpG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 53/124 (42.74%), Postives = 72/124 (58.06%), Query Frame = 2
Query:    2 LGPTVPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 370
            + P VP  GVC+G++     +GG + R+    MHGK++ V +DE G   + A +   F A RYHSLV    S PS    VTA T DG L MA RH+ +  L  VQFHPES++T  G  ++ NF+
Sbjct:   77 VSPRVPTLGVCLGMEAAVHEYGGTVGRAA-EPMHGKTTPVSHDETG---IFADIQQDFPAARYHSLVCT--SIPS-CFAVTATTRDGSLPMAIRHRDHP-LACVQFHPESVLTGVGHDVIGNFL 192          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_LACLA (Anthranilate synthase component II OS=Lactococcus lactis subsp. lactis GN=trpG PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 48/131 (36.64%), Postives = 79/131 (60.31%), Query Frame = 2
Query:   17 PLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKE-SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQ 406
            P+ G+C+G Q + E FGGK+ R    VMHGK+S V   +   + +   L + F   RYHS+V+++  + P  A+   A T+DG IMA  ++K + + G+QFHPESI T +G T++ NF+  +   + + ++
Sbjct:   72 PILGICLGFQAIVEVFGGKL-RLAHQVMHGKNSQVR--QTSGNLIFNHLPSKFLVMRYHSIVMDEAVALPDFAITAVA-TDDGEIMAIENEK-EQIYGLQFHPESIGTLDGMTMIENFVNQVNENKESSNE 197          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_VIBPA (Anthranilate synthase component II OS=Vibrio parahaemolyticus GN=trpG PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAA 397
            VP+ G+C+G Q + EA+GG +  +   ++HGK S++   E  +  +   L +P    RYHSLV  K     D+L +TA   D L+M+  H++ K + G QFHPESI+TT G T++ N I+  + K  A
Sbjct:   78 VPMIGICLGHQAIVEAYGGTVAGAG-EIIHGKVSMM---EHQDHAIYQNLPSPLAIARYHSLVATKVP---DSLTITAEV-DNLVMSVVHEQDK-VCGFQFHPESIMTTYGATLLGNAIEWALEKNNA 196          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_SERMA (Anthranilate synthase component II OS=Serratia marcescens GN=trpG PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.861e-14
Identity = 45/125 (36.00%), Postives = 78/125 (62.40%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 388
            +P+ G+C+G Q + EA+GG++ ++   ++HGK+S + +D    +G+ AG++NP    RYHSLV    + P+D L V A + + ++MA R  + + + G QFHPESI+TT G  ++   +   + K
Sbjct:   78 LPIIGICLGHQAIVEAYGGQVGQAG-EILHGKASAIAHDG---EGMFAGMANPLPVARYHSLV--GSNIPAD-LTVNARSGE-MVMAVRDDR-RRVCGFQFHPESILTTHGARLLEQTLAWALAK 193          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_SHIDY (Anthranilate synthase component II (Fragment) OS=Shigella dysenteriae GN=trpG-TRPD PE=4 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 2
Query:    2 LGPTVPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 388
            L   +P+ G+C+G Q + EA+GG + ++   ++HGK+S + +D +    + AGL+NP    RYHSLV    + P+  L + A   +G++MA RH   + + G QFHPESI+TT+G  ++   +    RK
Sbjct:   74 LSGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHDGQA---MFAGLTNPLPVARYHSLV--GSNIPA-GLTINAHF-NGMVMAVRHDADR-ICGFQFHPESILTTQGARLLEQTLAWAQRK 193          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_HAEIN (Anthranilate synthase component II OS=Haemophilus influenzae GN=trpG PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 44/125 (35.20%), Postives = 74/125 (59.20%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 388
            VP+ GVC+G Q + +AFGGK+V +   V+HGK S + +D    + +   L+NP    RYHSL+   +  P + +    +  +G+IMA RH+    +   QFHPESI+T +G  +++  I+ ++ +
Sbjct:   78 VPIIGVCLGHQALIQAFGGKVVHAG-EVLHGKVSRISHD---NEAMFKDLANPMPVARYHSLM--GQDLPKEFIVNAEY--NGIIMAIRHRDLP-ICAFQFHPESILTVQGSQLLQQSIEWLLNR 193          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_VIBCH (Anthranilate synthase component II OS=Vibrio cholerae GN=trpG PE=4 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 52/131 (39.69%), Postives = 76/131 (58.02%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQ 406
            VP+ G+C+G Q + EA+GG +V     ++HGK S++   E     +  GL +P    RYHSLV  +   PS AL VTA   +GL+M+  ++  K + G QFHPESI+TT G T++ N I   +    A +Q
Sbjct:   78 VPMIGICLGHQAIVEAYGG-VVAGAGEIIHGKVSMM---EHQNHAIYRGLPSPLAIARYHSLVATQ--VPS-ALTVTAEV-NGLVMSVVNEADK-VCGFQFHPESIMTTHGATLLANAIDWALSSTPAQTQ 199          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_YERPE (Anthranilate synthase component II OS=Yersinia pestis GN=trpG PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 42/115 (36.52%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 358
            +P+ G+C+G Q + EA+GG + ++   ++HGK+S + +D +G   + AG+ NP    RYHSLV    + P++      + E  ++MA RH  ++ + G QFHPESI+TT G  ++
Sbjct:   78 LPMIGICLGHQAIIEAYGGHVGQAG-EILHGKASAIEHDGQG---MFAGMPNPLPVARYHSLV--GSNLPAELTVNARFGE--MVMAVRHDAHR-VCGYQFHPESILTTHGARLL 183          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_ECOLI (Anthranilate synthase component II OS=Escherichia coli (strain K12) GN=trpD PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 45/125 (36.00%), Postives = 76/125 (60.80%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 388
            +P+ G+C+G Q + EA+GG + ++   ++HGK+S + +D +    + AGL+NP    RYHSLV    + P+  L + A   +G++MA RH   + + G QFHPESI+TT+G  ++   +    +K
Sbjct:   78 LPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHDGQA---MFAGLTNPLPVARYHSLV--GSNIPA-GLTINAHF-NGMVMAVRHDADR-VCGFQFHPESILTTQGARLLEQTLAWAQQK 193          
The following BLAST results are available for this feature:
BLAST of CX299051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
TRPE_RHIME9.190e-1642.24Anthranilate synthase OS=Rhizobium meliloti GN=trp... [more]
TRPG_HALSA1.568e-1542.74Anthranilate synthase component II OS=Halobacteriu... [more]
TRPG_LACLA3.492e-1536.64Anthranilate synthase component II OS=Lactococcus ... [more]
TRPG_VIBPA2.956e-1438.28Anthranilate synthase component II OS=Vibrio parah... [more]
TRPG_SERMA3.861e-1436.00Anthranilate synthase component II OS=Serratia mar... [more]
TRPG_SHIDY5.043e-1436.43Anthranilate synthase component II (Fragment) OS=S... [more]
TRPG_HAEIN5.043e-1435.20Anthranilate synthase component II OS=Haemophilus ... [more]
TRPG_VIBCH1.123e-1339.69Anthranilate synthase component II OS=Vibrio chole... [more]
TRPG_YERPE1.916e-1336.52Anthranilate synthase component II OS=Yersinia pes... [more]
TRPG_ECOLI2.503e-1336.00Anthranilate synthase component II OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionC06018D03SK RindPdig24 Citrus clementina cDNA clone C06018D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299051 ID=CX299051; Name=CX299051; organism=Citrus clementina; type=EST; length=725bp
ACTTGGACCTACTGTGCCTCTGTTTGGCGTTTGTATGGGTTTGCAGTGCA
TGGGAGAGGCTTTTGGAGGGAAGATTGTGCGTTCTCCTCTTGGTGTCATG
CATGGAAAAAGTTCTCTTGTGTATTATGATGAGAAAGGGGAGGATGGCTT
GCTTGCTGGACTATCAAATCCTTTCACAGCAGGTAGATATCATAGCCTTG
TGATTGAGAAAGAAAGCTTTCCTAGTGATGCGCTGGAAGTTACAGCATGG
ACAGAAGATGGGCTGATAATGGCTGCTCGTCACAAGAAATATAAGCATCT
GCAGGGGGTTCAATTTCATCCGGAGAGCATTATAACCACCGAGGGCAAGA
CAATTGTTCGCAATTTCATCAAAATGATAGTGAGAAAGGAAGCGGCTGAT
TCTCAGAATTAGACTATCAGCCATGTGGCAATATTTCATCAATCAAGCAT
ACCTCATTATTCTAGCAAAAGTTACTGATGCAGTGATTTTCTTTTCCTTA
CAAGATTCAGTACAAAAGTTTGTGGTCCTTGTCTATTAATATGTAGTGTC
TTTGACTCTTGAGAATTTGTTGCAATCTATGTTGGCTTCTCTTGGGGAGA
GGATTTGTATTCAAGGGGATGTTTGGGGTTGCATTAGATTCGTAAATGAT
TTGTTCTTAGATTAGATTTTGAAACATCAGCTTTGAAAAATATTTGATAA
GATGAATGTTTTATAATACTAATCC
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