CX299051

Overview
NameCX299051
Unique NameCX299051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_SALTY (Anthranilate synthase component II OS=Salmonella typhimurium GN=trpD PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 45/125 (36.00%), Postives = 76/125 (60.80%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 388
            +P+ G+C+G Q + EA+GG + ++   ++HGK+S + +D +    + AGL+NP    RYHSLV    + P+  L + A   +G++MA RH   + + G QFHPESI+TT+G  ++   +    +K
Sbjct:   78 LPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHDGQA---MFAGLANPLPVARYHSLV--GSNVPA-GLTINAHF-NGMVMAVRHDADR-VCGFQFHPESILTTQGARLLEQTLAWAQQK 193          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: PABA_STRLI (Para-aminobenzoate synthase glutamine amidotransferase component II OS=Streptomyces lividans PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 49/130 (37.69%), Postives = 71/130 (54.62%), Query Frame = 2
Query:    2 LGPTVPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP---FTAGRYHSLVIEKESFP----SDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 370
            L   +P+ G+C+G Q +G+A GG ++ +     HGK S + ++     G+ A L NP     AGRYHSLV+E          + LEV        IMA RH+    ++GVQFHPESI+++ G  I+ N I
Sbjct:   73 LAGRIPILGICLGQQALGQARGGLVIFA-----HGKLSNIEHN-----GIFAPLFNPPRALPAGRYHSLVVEPARIEVTGQCNQLEVVPQE----IMAIRHRDLP-VEGVQFHPESILSSNGAAILANLI 187          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_BUCBP (Anthranilate synthase component 2 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 373
            +P+ G+C+G Q + + +GG +  S   ++HG++SL+ +D K    +  G+SNP    RYHSL+    + P+  L V A   + ++MA R+  Y+ + G QFHPESI+TT G   ++  I+
Sbjct:   78 LPIIGICLGHQAIVKMYGGHVGYSG-EILHGQASLINHDNKA---MFLGMSNPLPVARYHSLICS--NIPN-MLVVNAHFNN-MVMAVRND-YEKICGFQFHPESILTTRGTEFLQRVIQ 188          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: Y1171_HAEIN (Putative anthranilate synthase component II OS=Haemophilus influenzae GN=HI1171 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 2
Query:   20 LFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 370
            + GVC+G Q + E FGG +      V HG+   +    +    L   L   F  G YHS  +++E FP D LE+TA  ++ ++MA +HK    +  VQFHPES ++  G+ I+RN++
Sbjct:   74 ILGVCLGHQTLCEFFGGTLYNLE-NVRHGQKRTLKV--RSNSPLFFDLPTEFNIGLYHSWGVQEEDFP-DCLEITALCDEDVVMAMQHKSLP-IYSVQFHPESYMSDFGEKILRNWL 185          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_COCHE (Anthranilate synthase component 2 OS=Cochliobolus heterostrophus GN=TRP1 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 2
Query:   23 FGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-------LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 376
            F  C    C+  ++GG +  +   ++HGK+  + +D KG   + AG+       RYHSL     + P D LE++A            +IM  RHK+Y  ++GVQFHPESI+T  G+ ++RNF+KM
Sbjct:  100 FSACAWESCIFYSYGGTVDVTGQ-ILHGKTCPLKHDGKG---VFAGVPQDVPVTRYHSLAGTHGTLP-DCLEISATIPANADAEIKEVIMGVRHKEYV-IEGVQFHPESILTEHGRLMMRNFLKM 218          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_BUCAP (Anthranilate synthase component 2 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trpG PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 370
            +P+ G+C+G Q + EA+GG I+     + HGK+SL+ +D      +  GL  P    RYHSL+  K   P + + + ++  D +IM+ R+    ++ G QFHPESI+TT G  ++   I
Sbjct:   78 IPIVGICLGHQAIVEAYGG-IIGYAGEIFHGKASLINHDGLE---MFEGLPQPLPVARYHSLICNK--IPKNFI-INSYFND-MIMSVRNN-LDYVCGFQFHPESILTTSGALLLEKII 187          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_HELPJ (Anthranilate synthase component II OS=Helicobacter pylori J99 GN=trpG PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 42/118 (35.59%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   17 PLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 370
            P+ GVC+GLQ + +++G KI+RS   ++HGK++ +      +  +  GL      GRYHSL+      P + LEV A   D + MA  +++ K L   QFHPESI+T +G+ ++   +
Sbjct:   79 PILGVCLGLQALAQSYGAKIIRSK-EIVHGKATTIALK---KHAVFKGLGESMVVGRYHSLM--ASGLPKN-LEVIA-EHDNIPMAIVNEEDKIL-AYQFHPESIMTLQGRALLEQSV 187          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_HELPY (Anthranilate synthase component II OS=Helicobacter pylori GN=trpG PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   17 PLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 370
            P+ G+C+GLQ + +++G KI+RS   ++HGK++ +      +  +  GL      GRYHSL+      P + LEV A   D + MA  +++ K L   QFHPESI+T +G+ ++   +
Sbjct:   79 PILGICLGLQALAQSYGAKIIRSK-EIVHGKATAIALK---KHAVFKGLGESMVVGRYHSLM--ASGLPKN-LEVIA-EHDNIPMAIVNEEDKIL-AYQFHPESIMTLQGRALLEQSV 187          
The following BLAST results are available for this feature:
BLAST of CX299051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
TRPG_SALTY3.269e-1336.00Anthranilate synthase component II OS=Salmonella t... [more]
PABA_STRLI1.622e-1237.69Para-aminobenzoate synthase glutamine amidotransfe... [more]
TRPG_BUCBP2.119e-1235.83Anthranilate synthase component 2 OS=Buchnera aphi... [more]
Y1171_HAEIN3.614e-1235.90Putative anthranilate synthase component II OS=Hae... [more]
TRPG_COCHE4.720e-1236.00Anthranilate synthase component 2 OS=Cochliobolus ... [more]
TRPG_BUCAP2.343e-1135.29Anthranilate synthase component 2 OS=Buchnera aphi... [more]
TRPG_HELPJ6.816e-1135.59Anthranilate synthase component II OS=Helicobacter... [more]
TRPG_HELPY8.902e-1134.75Anthranilate synthase component II OS=Helicobacter... [more]

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Properties
Property NameValue
Genbank descriptionC06018D03SK RindPdig24 Citrus clementina cDNA clone C06018D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299051 ID=CX299051; Name=CX299051; organism=Citrus clementina; type=EST; length=725bp
ACTTGGACCTACTGTGCCTCTGTTTGGCGTTTGTATGGGTTTGCAGTGCA
TGGGAGAGGCTTTTGGAGGGAAGATTGTGCGTTCTCCTCTTGGTGTCATG
CATGGAAAAAGTTCTCTTGTGTATTATGATGAGAAAGGGGAGGATGGCTT
GCTTGCTGGACTATCAAATCCTTTCACAGCAGGTAGATATCATAGCCTTG
TGATTGAGAAAGAAAGCTTTCCTAGTGATGCGCTGGAAGTTACAGCATGG
ACAGAAGATGGGCTGATAATGGCTGCTCGTCACAAGAAATATAAGCATCT
GCAGGGGGTTCAATTTCATCCGGAGAGCATTATAACCACCGAGGGCAAGA
CAATTGTTCGCAATTTCATCAAAATGATAGTGAGAAAGGAAGCGGCTGAT
TCTCAGAATTAGACTATCAGCCATGTGGCAATATTTCATCAATCAAGCAT
ACCTCATTATTCTAGCAAAAGTTACTGATGCAGTGATTTTCTTTTCCTTA
CAAGATTCAGTACAAAAGTTTGTGGTCCTTGTCTATTAATATGTAGTGTC
TTTGACTCTTGAGAATTTGTTGCAATCTATGTTGGCTTCTCTTGGGGAGA
GGATTTGTATTCAAGGGGATGTTTGGGGTTGCATTAGATTCGTAAATGAT
TTGTTCTTAGATTAGATTTTGAAACATCAGCTTTGAAAAATATTTGATAA
GATGAATGTTTTATAATACTAATCC
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