CX299053
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DDX41_HUMAN (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20 Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT-FHDTDVFYDLKQMLIQSNSPVPPEL 237 +VLVATDVA +G+D P + HVINYDMP IE Y HRIGRTGR+G TG+ATTF+ D V DLK +L+++ VPP L Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 563
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DBP2_DEBHA (ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii GN=DBP2 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20 Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1 Query: 4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKF 261 ++VATDVA RGID+ +++VIN DMPGNIE Y HRIGRTGRAG TG A +F T +++ + DL +++ ++N +PPEL + + F Sbjct: 405 IMVATDVAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLGGDLCKIMREANQTIPPELMRFDRRSF 490
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19 Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD-VFYDLKQMLIQSNSPVPPEL 237 +VLVATDVA +G+D P++ HVIN+DMP IE Y HRIGRTGR G GVATTF+ ++T+ + DLK +LI++ VPP L Sbjct: 526 DVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPAL 605
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19 Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKF 261 +++VATDVA RGID+ + HVINYDMPGNIE Y HRIGRTGR G +G A +F T ++ + DL +++ ++N VPPEL + + + Sbjct: 426 SIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQTVPPELQRFDRRSY 512
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19 Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 1 Query: 4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEA 252 +LVATDVA RG+DIP VAHV+N+D+P +I+ Y HRIGRTGRAGK+G+AT F +++ + L +++ +SN VP L+++ A Sbjct: 469 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMARSLAELMQESNQEVPAWLSRYAA 551
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19 Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 Query: 4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 270 ++VATDVA RGID+ + +VINYDMPGNIE Y HRIGRTGRAG TG A +F T + + L ++ ++N +PPEL K++ + G Sbjct: 413 IMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYDRRSYGGG 501
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19 Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 Query: 4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 270 ++VATDVA RGID+ + +VINYDMPGNIE Y HRIGRTGRAG TG A +F T + + L ++ ++N +PPEL K++ + G Sbjct: 413 IMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYDRRSYGGG 501
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19 Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKF 261 +++VATDVA RGID+ + HV+NYDMPGNIE Y HRIGRTGR G TG A +F T ++ + DL +++ ++ +PPEL ++ + Sbjct: 415 SIMVATDVAARGIDVKGITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISFFTDNEKKLGGDLCKIMREAKQTIPPELQAYDRRSY 501
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.335e-19 Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 237 N+LVAT VA RG+DIP+V HVINYD+P +++ Y HRIGRTGRAG TGVAT F + ++ L ++L ++N +PP L Sbjct: 454 NILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNIVKGLYEILEEANQEIPPFL 532
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.355e-19 Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 1 Query: 4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEA 252 +LVATDVA RG+DIP VAHVIN+D+P +I+ Y HRIGRTGRAGK+G+AT F +T + L +++ ++N VP L ++ A Sbjct: 481 ILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPLARPLSELMQEANQEVPQWLERYAA 563 The following BLAST results are available for this feature:
BLAST of CX299053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299053 ID=CX299053; Name=CX299053; organism=Citrus clementina; type=EST; length=572bpback to top |