CX299053

Overview
NameCX299053
Unique NameCX299053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DDX41_HUMAN (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 6.720e-20
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT-FHDTDVFYDLKQMLIQSNSPVPPEL 237
            +VLVATDVA +G+D P + HVINYDMP  IE Y HRIGRTGR+G TG+ATTF+    D  V  DLK +L+++   VPP L
Sbjct:  484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 563          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DBP2_DEBHA (ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii GN=DBP2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKF 261
            ++VATDVA RGID+  +++VIN DMPGNIE Y HRIGRTGRAG TG A +F T +++ +  DL +++ ++N  +PPEL + +   F
Sbjct:  405 IMVATDVAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLGGDLCKIMREANQTIPPELMRFDRRSF 490          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD-VFYDLKQMLIQSNSPVPPEL 237
            +VLVATDVA +G+D P++ HVIN+DMP  IE Y HRIGRTGR G  GVATTF+  ++T+ +  DLK +LI++   VPP L
Sbjct:  526 DVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPAL 605          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKF 261
            +++VATDVA RGID+  + HVINYDMPGNIE Y HRIGRTGR G +G A +F T  ++ +  DL +++ ++N  VPPEL + +   +
Sbjct:  426 SIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQTVPPELQRFDRRSY 512          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19
Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEA 252
            +LVATDVA RG+DIP VAHV+N+D+P +I+ Y HRIGRTGRAGK+G+AT F   +++ +   L +++ +SN  VP  L+++ A
Sbjct:  469 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMARSLAELMQESNQEVPAWLSRYAA 551          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 270
            ++VATDVA RGID+  + +VINYDMPGNIE Y HRIGRTGRAG TG A +F T  +  +   L  ++ ++N  +PPEL K++   +  G
Sbjct:  413 IMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYDRRSYGGG 501          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPG 270
            ++VATDVA RGID+  + +VINYDMPGNIE Y HRIGRTGRAG TG A +F T  +  +   L  ++ ++N  +PPEL K++   +  G
Sbjct:  413 IMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYDRRSYGGG 501          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKF 261
            +++VATDVA RGID+  + HV+NYDMPGNIE Y HRIGRTGR G TG A +F T ++  +  DL +++ ++   +PPEL  ++   +
Sbjct:  415 SIMVATDVAARGIDVKGITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISFFTDNEKKLGGDLCKIMREAKQTIPPELQAYDRRSY 501          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.335e-19
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 237
            N+LVAT VA RG+DIP+V HVINYD+P +++ Y HRIGRTGRAG TGVAT F    + ++   L ++L ++N  +PP L
Sbjct:  454 NILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNIVKGLYEILEEANQEIPPFL 532          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.355e-19
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEA 252
            +LVATDVA RG+DIP VAHVIN+D+P +I+ Y HRIGRTGRAGK+G+AT F    +T +   L +++ ++N  VP  L ++ A
Sbjct:  481 ILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPLARPLSELMQEANQEVPQWLERYAA 563          
The following BLAST results are available for this feature:
BLAST of CX299053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX41_HUMAN6.720e-2058.75Probable ATP-dependent RNA helicase DDX41 OS=Homo ... [more]
DBP2_DEBHA8.776e-2051.16ATP-dependent RNA helicase DBP2 OS=Debaryomyces ha... [more]
DDX41_DICDI1.146e-1957.50Probable ATP-dependent RNA helicase ddx41 OS=Dicty... [more]
DBP2_CANAL1.146e-1950.57ATP-dependent RNA helicase DBP2 OS=Candida albican... [more]
RH52C_ORYSJ1.955e-1951.81DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
DBP2_YEAST1.955e-1950.56ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS71.955e-1950.56ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_LODEL1.955e-1948.28ATP-dependent RNA helicase DBP2 OS=Lodderomyces el... [more]
DED1_CANGA3.335e-1954.43ATP-dependent RNA helicase DED1 OS=Candida glabrat... [more]
RH52B_ORYSJ4.355e-1953.01DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionC06018D05SK RindPdig24 Citrus clementina cDNA clone C06018D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299053 ID=CX299053; Name=CX299053; organism=Citrus clementina; type=EST; length=572bp
AATGTTCTTGTTGCCACTGATGTTGCCGGGCGTGGGATTGATATACCTGA
TGTGGCCCATGTCATCAATTATGATATGCCTGGGAATATCGAAATGTATA
CTCATCGTATTGGACGAACAGGCCGTGCTGGGAAGACTGGTGTGGCTACA
ACATTCTTGACCTTCCATGATACTGATGTATTTTATGATCTCAAGCAGAT
GCTTATCCAGAGTAACAGTCCTGTGCCTCCAGAATTGGCTAAACATGAGG
CTTCAAAGTTCAAGCCGGGAACAATCCCTGACAGACCTCCTAGGCGCAAT
GACACTGTTTTTGCTCATTGAGGAATATGATGATTTGAAAGAAACTGTCA
AAAAGGGCTTGCTCAAACGTTTTTGGCTATATAATTCTCTGTTAGGACCT
GATTACTTTTTGCTTGCTGCAGTGGGTAGGAGTGATTATTTGGAGTAAGA
CTATCTGTATTCTGCCTTTCTGAAAGTGGATATTCTTACATGTTGCGCTG
CAGTAAAGTTTCTACCTTCCTGATTGTTTATTGAATAGGAAGGTTTTGAT
AATCAAAAAAAAAAAAAAAAAA
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