CX299658

Overview
NameCX299658
Unique NameCX299658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACAH (2-succinylbenzoate--CoA ligase OS=Bacillus thuringiensis (strain Al Hakam) GN=menE PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            GEIV+ G  V  GY     A  ET  NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HP V EA VV   D++WG+ P AFV    E+ +       E+I+  C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKSGEITE-------EEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACAC (2-succinylbenzoate--CoA ligase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=menE PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            GEIV+ G  V  GY     A  ET  NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HP V EA VV   D++WG+ P AFV    E+ +       E+I+  C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKSGEITE-------EEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACAA (2-succinylbenzoate--CoA ligase OS=Bacillus anthracis (strain A0248) GN=menE PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            GEIV+ G  V  GY     A  ET  NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HP V EA VV   D++WG+ P AFV    E+ +       E+I+  C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKSGEITE-------EEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACCZ (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ZK / E33L) GN=menE PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            GEIV+ G  V  GY     A  ET  NGW HTGDLG    + ++ + DR  D+IISGGENI   ++E ++  HP V EA VV   D++WG+ P AFV    E+ +       E+I+  C  K+  Y VPK   F   LP+ A+ K+ +  LR   +EM
Sbjct:  332 GEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKSGEITE-------EEILHFCEEKLAKYKVPKKAWFLEELPRNASKKLLRRELRQLVEEM 482          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_LISMO (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes GN=menE PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 56/154 (36.36%), Postives = 96/154 (62.34%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 503
            GEI++ G  +  GYL N KA E +F +GW+ TGD+G    + ++ + +R  D+IISGGENI   E+E+++  + AV E +V+ + D++WG  P AF+  +   D+       +++  +C+  + +Y +PK I+    LPKTA+GKIQ++ L+ +
Sbjct:  318 GEILLKGPSITPGYLHNKKATEASFVDGWFKTGDIGYLDEEGFLFVVERRSDLIISGGENIYPTEIEHVIGEYVAVKEVAVIGQPDDKWGSVPVAFIVAEETFDE-------DELQLICQTNLASYKIPKQIIIVEKLPKTASGKIQRNKLKER 464          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_GEOSW (2-succinylbenzoate--CoA ligase OS=Geobacillus sp. (strain WCH70) GN=menE PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26
Identity = 62/152 (40.79%), Postives = 87/152 (57.24%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            GEIV+ G  V KGYL  P A  +    GW++TGD+G    D ++ + DR  D+IISGGEN+   E+E ++  H AV EA V    DE WG+ PCAFV  K     + EQ     + + C+A +  Y +PK I F   LP+ A+ K+ +H L+
Sbjct:  335 GEIVVKGPNVTKGYLHRPDATAKAIRGGWFYTGDIGYIDEDGFLYVLDRRSDLIISGGENVYPAEIEAVLLSHEAVEEAGVTGIDDETWGQVPCAFVKRKRGYSVTVEQ-----LKQFCQAHLAKYKIPKQIYFVDELPRNASQKLLRHQLK 481          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_LISMF (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=menE PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 55/154 (35.71%), Postives = 93/154 (60.39%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLRAK 503
            GEI++ G  +  GYL N KA E +F +GW+ TGD+G    + ++ + +R  D+IISGGENI   E+E+++  +  V E +V+ + D++WG  P AF+  +   D++       ++  +C   +  Y +PK I +   LPKTA+GKIQ++ L+ +
Sbjct:  318 GEILLKGPSITPGYLHNKKATEASFVDGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVISEYEGVKEVAVIGKPDDKWGSVPVAFIVAEETFDEA-------ELRLICETNLAGYKIPKQITIVEKLPKTASGKIQRNKLKER 464          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACA2 (2-succinylbenzoate--CoA ligase OS=Bacillus amyloliquefaciens (strain FZB42) GN=menE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25
Identity = 61/156 (39.10%), Postives = 84/156 (53.85%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIV-FGPLPKTATGKIQKHVLRAKAK 509
            GEI + G  VMKGY     AN+  F NGW+ TGDLG    + ++ + DR  D+IISGGENI   EVE  +  HPAV EA V    D +WG+ P AF+ L   V        +E++   CR ++  Y +P +      LP+ A+ K+ +H L    K
Sbjct:  335 GEITVKGPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIYPAEVEAALLAHPAVAEAGVSGSEDPKWGKVPHAFLVLTSSVS-------SEELTAFCRERLAKYKIPAAFFEVDGLPRNASNKLMRHRLNELRK 483          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_LISIN (2-succinylbenzoate--CoA ligase OS=Listeria innocua GN=menE PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 57/155 (36.77%), Postives = 95/155 (61.29%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMK-LCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLRAK 503
            GEI++ G  +  GYL N KA  + F +GW+ TGD+G    + ++ + +R  D+IISGGENI   E+E+++  + AV E +VV ++D +WG  P AF+ +    D        E ++K +C+  + ++ +PK I +   LPKTA+GKIQ++ L+ +
Sbjct:  318 GEILLKGPSITPGYLHNEKATAKAFIDGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVIGAYEAVEEVAVVGKSDAKWGSVPVAFIVVNEGFD--------EGVLKDICQTNLASFKIPKQITIVEHLPKTASGKIQRNKLKER 464          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACSU (2-succinylbenzoate--CoA ligase OS=Bacillus subtilis GN=menE PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24
Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVP-KSIVFGPLPKTATGKIQKHVLRAKAK 509
            GEI++ G  VMK Y     ANE +F NGW  TGDLG    + ++ + DR  D+IISGGENI   EVE+++  HPAV EA V    D++WG+ P A++ L   V        A ++   C+ ++  Y +P K  V   LP+ A+ K+ ++ L+   K
Sbjct:  334 GEIMVKGPNVMKSYFNRESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDKKWGKVPHAYLVLHKPVS-------AGELTDYCKERLAKYKIPAKFFVLDRLPRNASNKLLRNQLKDARK 482          
The following BLAST results are available for this feature:
BLAST of CX299658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
MENE_BACAH1.609e-2740.512-succinylbenzoate--CoA ligase OS=Bacillus thuring... [more]
MENE_BACAC1.609e-2740.512-succinylbenzoate--CoA ligase OS=Bacillus anthrac... [more]
MENE_BACAA1.609e-2740.512-succinylbenzoate--CoA ligase OS=Bacillus anthrac... [more]
MENE_BACCZ2.745e-2740.512-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_LISMO1.362e-2636.362-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
MENE_GEOSW2.324e-2640.792-succinylbenzoate--CoA ligase OS=Geobacillus sp. ... [more]
MENE_LISMF6.761e-2635.712-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
MENE_BACA23.356e-2539.102-succinylbenzoate--CoA ligase OS=Bacillus amyloli... [more]
MENE_LISIN4.383e-2536.772-succinylbenzoate--CoA ligase OS=Listeria innocua... [more]
MENE_BACSU1.275e-2438.462-succinylbenzoate--CoA ligase OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionC06024G09SK RindPdig24 Citrus clementina cDNA clone C06024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299658 ID=CX299658; Name=CX299658; organism=Citrus clementina; type=EST; length=683bp
GAGGCTAGACTCAGCAACCTGTTCCTGCTGACGGGAAAACAATTGGAGAA
ATAGTGATGAGTGGTAATGTGGTGATGAAGGGTTACTTAAAGAACCCAAA
AGCCAACGAGGAAACTTTTGCAAATGGATGGTACCATACTGGCGATCTTG
GAGTAAAGCATCCGGATAATTATATAGAAATCAAAGACAGATCAAAGGAC
ATTATCATCTCCGGAGGTGAAAACATCAGTAGCGTGGAGGTAGAGAACAT
GATGTACTTGCACCCGGCAGTTCTTGAGGCATCTGTGGTGGCAAGGGCAG
ATGAGCGTTGGGGAGAGTCTCCTTGTGCTTTCGTGACGTTGAAGCCAGAA
GTGGATAAATCCAACGAGCAACAACTGGCAGAGGATATAATGAAGCTTTG
TCGGGCAAAAATGCCTGCCTACTGGGTTCCAAAGTCAATAGTATTTGGAC
CATTGCCAAAAACTGCTACTGGGAAGATTCAGAAGCATGTGCTAAGGGCT
AAGGCAAAAGAGATGGGACCTGTTAGAAAGAGTAAGCTTTAATCCAATGA
TGATCACAAAAAAAAAAAAGAAACAAATGCTTCTTGTTTTTTCAATTGCC
ATTATAGAAGGATTTTAATCTTCAATAGAATAAAGCTGTAAGTTAATACA
CACTATTTATTCAAATTAAAAAAAAAAAAAAAA
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