CX299658

Overview
NameCX299658
Unique NameCX299658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAAC (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain COL) GN=menE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM  YL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P + +A  V   D+ WG+ P  +   + ++ K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNVYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA--QLIAYLSQHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAA8 (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain NCTC 8325) GN=menE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM  YL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P + +A  V   D+ WG+ P  +   + ++ K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNVYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA--QLIAYLSQHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAA3 (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain USA300) GN=menE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM  YL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P + +A  V   D+ WG+ P  +   + ++ K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNVYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA--QLIAYLSQHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: CAIC_ECO7I (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   15 QPVPADGKTIGEIVMSG---NVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLR 497
            +P+PA    IGEI + G     + K Y  NPKA  +   A+GW HTGD G +  + +    DR  ++I  GGEN+S VE+EN++  HP + +  VV   D    E+  AFV L        E    E+  + C   M  + VP  + +   LP+  +GKI +  L+
Sbjct:  359 RPLPAG--EIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFADRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVL-----NEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: CAIC_SHIFL (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri GN=caiC PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   15 QPVPADGKTIGEIVMSG---NVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLR 497
            +P+PA    IGEI + G     + K Y  NPKA  +   A+GW HTGD G +  + +    DR  ++I  GGEN+S VE+EN++  HP + +  VV   D    E+  AFV L        E    E+  + C   M  + VP  + +   LP+  +GKI +  L+
Sbjct:  359 RPLPAG--EIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL-----NEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSM (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   15 QPVPADGKTIGEIVMSG---NVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLR 497
            +P+PA    IGEI + G     + K Y  NPKA  +   A+GW HTGD G +  + +    DR  ++I  GGEN+S VE+EN++  HP + +  VV   D    E+  AFV L        E    E+  + C   M  + VP  + +   LP+  +GKI +  L+
Sbjct:  359 RPLPAG--EIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL-----NEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAES (2-succinylbenzoate--CoA ligase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=menE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 56/166 (33.73%), Postives = 91/166 (54.82%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFAN-GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMK-LCRAKMP-AYWVPKSIVFGPLPKTATGKIQKHVLRAKAKEMGPVRKS 533
            GE+++ G  VM GYL  PK  ++TF N G++ TGD+     + Y+ I DR KD+IISGGENI   ++E +      + +A  V  +D+ WG+ P  +     ++   N+ +L E     L R K+P  Y+  +S     LP T+TGK+Q+  ++++    G   +S
Sbjct:  318 GELLIKGENVMNGYLY-PKYLKDTFDNDGYFQTGDIAEIDDEGYVIIYDRRKDLIISGGENIYPYQIETIAKDFEGIEDAVCVGISDDTWGQVPILYYVTNQDI---NQNELIEHFENHLARYKIPKKYYQVES-----LPYTSTGKLQRKKVKSEDLNEGKNNES 474          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: CAIC_SHIDS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiC PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   15 QPVPADGKTIGEIVMSG---NVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLR 497
            +P+PA    IGEI + G     + K Y  NPKA  +   A+GW HTGD G +  + +    DR  ++I  GGEN+S VE+EN++  HP + +  VV   D    E+  AFV L        E    E+  + C   M  + VP  + +   LP+  +GKI +  L+
Sbjct:  359 RPLPAG--EIGEICIKGVLGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL-----NEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKVLPRNCSGKIIRKNLK 517          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: CAIC_ECO5E (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   15 QPVPADGKTIGEIVMSG---NVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLR 497
            +P+PA    IGEI + G     + K Y  NPKA  +   A+GW HTGD G +  + +    DR  ++I  GGEN+S VE+EN++  HP + +  VV   D    E+  AFV L        E    E+  + C   M  + VP  + +   LP+  +GKI +  L+
Sbjct:  359 RPLPAG--EIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL-----NEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: CAIC_ECO57 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 GN=caiC PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   15 QPVPADGKTIGEIVMSG---NVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLR 497
            +P+PA    IGEI + G     + K Y  NPKA  +   A+GW HTGD G +  + +    DR  ++I  GGEN+S VE+EN++  HP + +  VV   D    E+  AFV L        E    E+  + C   M  + VP  + +   LP+  +GKI +  L+
Sbjct:  359 RPLPAG--EIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL-----NEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
The following BLAST results are available for this feature:
BLAST of CX299658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
MENE_STAAC2.180e-1634.002-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAA82.180e-1634.002-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAA32.180e-1634.002-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
CAIC_ECO7I2.180e-1633.73Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_SHIFL2.847e-1633.73Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECOSM2.847e-1633.73Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
MENE_STAES3.719e-1633.732-succinylbenzoate--CoA ligase OS=Staphylococcus e... [more]
CAIC_SHIDS3.719e-1633.73Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECO5E3.719e-1633.73Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO573.719e-1633.73Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06024G09SK RindPdig24 Citrus clementina cDNA clone C06024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299658 ID=CX299658; Name=CX299658; organism=Citrus clementina; type=EST; length=683bp
GAGGCTAGACTCAGCAACCTGTTCCTGCTGACGGGAAAACAATTGGAGAA
ATAGTGATGAGTGGTAATGTGGTGATGAAGGGTTACTTAAAGAACCCAAA
AGCCAACGAGGAAACTTTTGCAAATGGATGGTACCATACTGGCGATCTTG
GAGTAAAGCATCCGGATAATTATATAGAAATCAAAGACAGATCAAAGGAC
ATTATCATCTCCGGAGGTGAAAACATCAGTAGCGTGGAGGTAGAGAACAT
GATGTACTTGCACCCGGCAGTTCTTGAGGCATCTGTGGTGGCAAGGGCAG
ATGAGCGTTGGGGAGAGTCTCCTTGTGCTTTCGTGACGTTGAAGCCAGAA
GTGGATAAATCCAACGAGCAACAACTGGCAGAGGATATAATGAAGCTTTG
TCGGGCAAAAATGCCTGCCTACTGGGTTCCAAAGTCAATAGTATTTGGAC
CATTGCCAAAAACTGCTACTGGGAAGATTCAGAAGCATGTGCTAAGGGCT
AAGGCAAAAGAGATGGGACCTGTTAGAAAGAGTAAGCTTTAATCCAATGA
TGATCACAAAAAAAAAAAAGAAACAAATGCTTCTTGTTTTTTCAATTGCC
ATTATAGAAGGATTTTAATCTTCAATAGAATAAAGCTGTAAGTTAATACA
CACTATTTATTCAAATTAAAAAAAAAAAAAAAA
back to top