CX299658

Overview
NameCX299658
Unique NameCX299658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11699 contig Ccv1_Contig11699:9..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: YDAB_BACSU (Putative acyl--CoA ligase ydaB OS=Bacillus subtilis GN=ydaB PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 59/155 (38.06%), Postives = 87/155 (56.13%), Query Frame = 3
Query:   42 IGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVLRAKA 506
            IGEIV+    + KGY  NP+A  +   NGW+ TGD G    D +I I  R KD+II GG+N+   +VE ++   P +LE +VV   D  +GE P AF+     V    ++   ED++  C+ ++ AY +P+      LPK   GK++K VLR +A
Sbjct:  351 IGEIVVHTPFLFKGYEDNPEATAKVLQNGWFRTGDSGYVDEDGFIFITGRYKDVIIYGGDNVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFI-----VKNGGQRITEEDVIAFCKERLSAYKIPEVEFVNELPKNNLGKVKKDVLRNQA 500          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: YNGI_BACSU (Putative acyl-CoA synthetase yngI OS=Bacillus subtilis GN=yngI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.846e-24
Identity = 62/159 (38.99%), Postives = 88/159 (55.35%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFAN-GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEM 515
            GE+   G  VMKGY K+  A  +   + GW  TGDL V   D Y  I  R KD++I GGENI   E+E  +Y HPAVL+  VV   D ++GE   A++ L     K  +    +++   C+ K+  + +P+ ++F    P TA+GKIQK+ LR K  EM
Sbjct:  389 GELCTRGYHVMKGYYKDKDATRKAINHDGWLFTGDLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQHPAVLDVQVVGVPDAKFGEEAAAWIKL-----KDGKSVSPDELKAYCKGKIARHKIPRYVIFTDDYPMTASGKIQKYKLREKTIEM 542          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSF2_MOUSE (Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 65/158 (41.14%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANG-WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKE 512
            GE+ + G  VM+GY   P+   ET     WY TGD+ +     + +I  RSKD+II GGENI   E+E+    HP V EA VV   DER GE  CA + L     KS E   AE+I   C+ K+  + +P+ IVF    P T +GKIQK  LR + ++
Sbjct:  459 GELYIRGYCVMQGYWGEPQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEICACIRL-----KSGETTTAEEIKAFCKGKISHFKIPRYIVFVEGYPLTISGKIQKFKLREQMEQ 611          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSF2_BOVIN (Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.079e-23
Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   39 TIGEIVMSGNVVMKGYLKNPKANEETFANG-WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKE 512
            T GE+ + G  VM GY   P+  EE      WY TGD+ +     + +I  RSKD+II GGENI   E+E+  + HP V E  VV   D+R GE  CA + L     K  E+  AE+I   C+ K+  + +P+ IVF    P T +GKIQK  LR + ++
Sbjct:  457 TPGELCIRGYCVMLGYWGEPQKTEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEICACIRL-----KEGEKTTAEEIKAFCKGKISHFKIPRYIVFVTNYPLTVSGKIQKFKLREQMEQ 611          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSF2_DANRE (Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 64/161 (39.75%), Postives = 89/161 (55.28%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANG-WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKA-KEMG 518
            GE+++ G  VM  Y ++ +   E      WY TGD+       Y +I+ R KD+II GGENI   E+E  ++ HP +LEA VV   DER GE  CA + L     K  ++   E+I   C+ K+  Y VP+ I+F    P T TGKIQKH LR +  K++G
Sbjct:  450 GELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGDIASLDQFAYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQVVGVKDERMGEEVCACIRL-----KEGQECTVEEIKAYCKGKIAHYKVPRYILFVQDYPLTITGKIQKHKLRERTEKQLG 605          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_GEOKA (2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus GN=menE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 60/159 (37.74%), Postives = 82/159 (51.57%), Query Frame = 3
Query:   24 PADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            PA     GEIV+ G  V KGY + P+A  +    GW+ TGD+G    D ++ + DR  D+IISGGEN+   EVE ++  HP V EA V    +E WG+ P AFV LK              +   CR ++  Y VP  I F   LP+ A  K+ +  L+
Sbjct:  327 PAAPHEAGEIVVKGPNVTKGYWQRPEATAQAIRGGWFFTGDIGYLDEDGFLYVLDRRSDLIISGGENVYPAEVEAVLLSHPDVEEAGVTGVENETWGQVPYAFVRLKRGASPDEAA-----LRAFCRERLAKYKVPARIYFVDELPRNAAQKLLRRELK 480          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_BACP2 (2-succinylbenzoate--CoA ligase OS=Bacillus pumilus (strain SAFR-032) GN=menE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 503
            GEI++ G  VMKGYL   ++    F  GW  TGD+G    + ++ + DR  D+IISGGENI   E+E ++  H  V EA V    D+RWGE P AF+    ++ ++       ++  LC + +  Y  P S  F   LP+ A+ K+Q+H L++K
Sbjct:  333 GEIMVKGANVMKGYLYREESTAAAFDQGWLKTGDIGYVDEEGFLFVLDRRSDLIISGGENIYPAEIEAVLLTHSHVKEAGVTGIDDDRWGEVPAAFLVTDHKIPEN-------ELYALCESHLAKYKWPASFHFVDELPRNASNKLQRHRLKSK 479          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSF2_PONAB (Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 63/159 (39.62%), Postives = 86/159 (54.09%), Query Frame = 3
Query:   27 ADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            A+  T GE+ + G  VM GY   P+  EE    + WY TGD+   +   + +I  RSKD+II GGENI   E+E+  + HP V E  VV   D+R GE  CA + L     K  E+   E+I   C+ K+  + +P+ IVF    P T +GKIQK  LR
Sbjct:  453 AELNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYRTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRL-----KDGEETTVEEIKAFCKGKISHFKIPRYIVFVTNYPLTISGKIQKFKLR 606          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSF2_MACFA (Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 63/159 (39.62%), Postives = 86/159 (54.09%), Query Frame = 3
Query:   27 ADGKTIGEIVMSGNVVMKGYLKNP-KANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            A+  T GE+ + G  VM GY   P K  E    + WY TGD+   +   + +I  RSKD+II GGENI   E+E+  + HP V E  VV   D+R GE  CA + L     K  E+  AE++   C+ K+  + +P+ IVF    P T +GKIQK  LR
Sbjct:  456 AELNTPGELCIRGYCVMLGYWGEPQKTGEAVDQDKWYRTGDIATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRL-----KDGEETTAEEMKAFCKGKISHFKIPRYIVFVTNYPLTTSGKIQKFKLR 609          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:   42 IGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            +GE+++ G  VMKGY K P   E    +GW +TGDL  +  D Y  I DR KD+II GG N+   EVE ++Y HP V EA V+   D + GE+   +V  K            EDIM+ C   +  Y  P +I F   +PK ATGK+ +  LR
Sbjct:  362 VGELIVKGPNVMKGYYKMPMETEHALKDGWLYTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPK------RSGVTEEDIMQHCEKHLAKYKRPAAITFLDDIPKNATGKMLRRALR 508          
The following BLAST results are available for this feature:
BLAST of CX299658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
YDAB_BACSU2.841e-2438.06Putative acyl--CoA ligase ydaB OS=Bacillus subtili... [more]
YNGI_BACSU4.846e-2438.99Putative acyl-CoA synthetase yngI OS=Bacillus subt... [more]
ACSF2_MOUSE8.265e-2441.14Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_BOVIN1.079e-2339.38Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_DANRE1.841e-2339.75Acyl-CoA synthetase family member 2, mitochondrial... [more]
MENE_GEOKA4.102e-2337.742-succinylbenzoate--CoA ligase OS=Geobacillus kaus... [more]
MENE_BACP24.102e-2337.012-succinylbenzoate--CoA ligase OS=Bacillus pumilus... [more]
ACSF2_PONAB5.357e-2339.62Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_MACFA5.357e-2339.62Acyl-CoA synthetase family member 2, mitochondrial... [more]
LCFB_BACSU6.997e-2339.87Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]

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Properties
Property NameValue
Genbank descriptionC06024G09SK RindPdig24 Citrus clementina cDNA clone C06024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299658 ID=CX299658; Name=CX299658; organism=Citrus clementina; type=EST; length=683bp
GAGGCTAGACTCAGCAACCTGTTCCTGCTGACGGGAAAACAATTGGAGAA
ATAGTGATGAGTGGTAATGTGGTGATGAAGGGTTACTTAAAGAACCCAAA
AGCCAACGAGGAAACTTTTGCAAATGGATGGTACCATACTGGCGATCTTG
GAGTAAAGCATCCGGATAATTATATAGAAATCAAAGACAGATCAAAGGAC
ATTATCATCTCCGGAGGTGAAAACATCAGTAGCGTGGAGGTAGAGAACAT
GATGTACTTGCACCCGGCAGTTCTTGAGGCATCTGTGGTGGCAAGGGCAG
ATGAGCGTTGGGGAGAGTCTCCTTGTGCTTTCGTGACGTTGAAGCCAGAA
GTGGATAAATCCAACGAGCAACAACTGGCAGAGGATATAATGAAGCTTTG
TCGGGCAAAAATGCCTGCCTACTGGGTTCCAAAGTCAATAGTATTTGGAC
CATTGCCAAAAACTGCTACTGGGAAGATTCAGAAGCATGTGCTAAGGGCT
AAGGCAAAAGAGATGGGACCTGTTAGAAAGAGTAAGCTTTAATCCAATGA
TGATCACAAAAAAAAAAAAGAAACAAATGCTTCTTGTTTTTTCAATTGCC
ATTATAGAAGGATTTTAATCTTCAATAGAATAAAGCTGTAAGTTAATACA
CACTATTTATTCAAATTAAAAAAAAAAAAAAAA
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