CX299658

Overview
NameCX299658
Unique NameCX299658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSA_LEPIN (Acetyl-coenzyme A synthetase OS=Leptospira interrogans GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 57/174 (32.76%), Postives = 86/174 (49.43%), Query Frame = 3
Query:   21 VPADGKTI---GEIVMSGNV--------VMKGYLKNPKANEETFAN---GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 497
            V  DGK I   GE+  SGN+        +M+G   +PK   ET+ +   G+Y TGD   +  D Y  I  R  D+I   G  I S EVE+ +  + +V EA+VV    +  G+   A+VT+K  V  +    L ++++      +     P  I + P LPKT +GKI + +LR
Sbjct:  458 VDNDGKEITDKGEV--SGNLCIKGPWPSMMRGVYGDPKRFFETYFSQFKGYYFTGDGARRDKDGYFWITGRVDDVINVSGHRIGSAEVESALVENKSVAEAAVVGFPHDIKGQGIYAYVTVKEGV--TTNDVLKKELISTVEKMIGKIARPDVIHWAPGLPKTRSGKIMRRILR 627          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSA_LEPIC (Acetyl-coenzyme A synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 57/174 (32.76%), Postives = 86/174 (49.43%), Query Frame = 3
Query:   21 VPADGKTI---GEIVMSGNV--------VMKGYLKNPKANEETFAN---GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 497
            V  DGK I   GE+  SGN+        +M+G   +PK   ET+ +   G+Y TGD   +  D Y  I  R  D+I   G  I S EVE+ +  + +V EA+VV    +  G+   A+VT+K  V  +    L ++++      +     P  I + P LPKT +GKI + +LR
Sbjct:  458 VDNDGKEITDKGEV--SGNLCIKGPWPSMMRGVYGDPKRFFETYFSQFKGYYFTGDGARRDKDGYFWITGRVDDVINVSGHRIGSAEVESALVENKSVAEAAVVGFPHDIKGQGIYAYVTVKEGV--TTNDVLKKELISTVEKMIGKIARPDVIHWAPGLPKTRSGKIMRRILR 627          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSA_LEPBP (Acetyl-coenzyme A synthetase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 53/176 (30.11%), Postives = 87/176 (49.43%), Query Frame = 3
Query:   15 QPVPADGKTI---GEIVMSGNV--------VMKGYLKNPKANEETFAN---GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 497
            QPV  D + +   G+  +SGN+        +M+G   +PK   +T+ +   G+Y TGD   +  + Y  I  R  D++   G  I S EVE+ +  H +V EA+VV    +  G+   A+VT+K  V       L ++++ +    +     P  I + P LPKT +GKI + +LR
Sbjct:  447 QPVLVDNEGVELKGKGEISGNLCIAKPWPSMMRGVYGDPKRFFDTYFSQFKGYYFTGDGANRDKEGYFRITGRVDDVLNVSGHRIGSAEVESALVEHKSVAEAAVVGFPHDIKGQGIYAYVTVKQGV--VTNDLLKKELIAMVEKVIGKIARPDVIHWAPGLPKTRSGKIMRRILR 620          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSA_LEPBA (Acetyl-coenzyme A synthetase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 53/176 (30.11%), Postives = 87/176 (49.43%), Query Frame = 3
Query:   15 QPVPADGKTI---GEIVMSGNV--------VMKGYLKNPKANEETFAN---GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 497
            QPV  D + +   G+  +SGN+        +M+G   +PK   +T+ +   G+Y TGD   +  + Y  I  R  D++   G  I S EVE+ +  H +V EA+VV    +  G+   A+VT+K  V       L ++++ +    +     P  I + P LPKT +GKI + +LR
Sbjct:  447 QPVLVDNEGVELKGKGEISGNLCIAKPWPSMMRGVYGDPKRFFDTYFSQFKGYYFTGDGANRDKEGYFRITGRVDDVLNVSGHRIGSAEVESALVEHKSVAEAAVVGFPHDIKGQGIYAYVTVKQGV--VTNDLLKKELIAMVEKVIGKIARPDVIHWAPGLPKTRSGKIMRRILR 620          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSA_THEEB (Acetyl-coenzyme A synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=acsA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 44/129 (34.11%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  129 WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSN--EQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKA 506
            +Y  GD   +  D Y  +  R  D+I   G  + ++E+E+ +  HPAV EA+VV + DE  GE   AFV L+     S+  +Q+L + ++     ++ A   P  I F   LPKT +GKI + +LR+ A
Sbjct:  507 FYFAGDGARRDEDGYFWVMGRVDDVINVSGHRLGTMEIESALVSHPAVAEAAVVGKPDEVKGEEIVAFVILEGSATPSDALQQELKQHVVN----EIGALARPAEIRFTDALPKTRSGKIMRRLLRSLA 631          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSA_BURS3 (Acetyl-coenzyme A synthetase OS=Burkholderia sp. (strain 383) GN=acsA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 3
Query:  132 YHTGDLGVKHPDN-YIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNE-QQLAEDIMKLCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAK 509
            Y  GD  V+  D  Y  I  R  D++   G  + ++E+E+ +  H  V EA+VV R D+  GE+  AFV LK    +  E   LA+ +      ++     PK I FG  LPKT +GKI + +LR+ AK
Sbjct:  508 YLAGDGTVRDKDTGYFTIMGRIDDVLNVSGHRLGTMEIESALVSHELVAEAAVVGRPDDTTGEAVVAFVVLKRSRPEGEEAAALAKTLRDWVGKQIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRSLAK 636          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSA1_PSEAE (Acetyl-coenzyme A synthetase 1 OS=Pseudomonas aeruginosa GN=acsA1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 42/125 (33.60%), Postives = 64/125 (51.20%), Query Frame = 3
Query:  126 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLR 497
            G Y TGD   +  D Y  I  R  D++   G  + + EVE+ M  HP V EA+VV    +  G+    +VTL   V+ S  + L +++ +  R ++     P  I + P LPKT +GKI + +LR
Sbjct:  494 GMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRMGTAEVESAMVAHPKVAEAAVVGMQHDIKGQGIYVYVTLNSGVEPS--EALRQELKQWVRREIGPIATPDVIQWAPGLPKTRSGKIMRRILR 616          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACS1_CANAL (Acetyl-coenzyme A synthetase 1 OS=Candida albicans GN=ACS1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 40/129 (31.01%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  117 FANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNE-QQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            +AN +Y +GD   +  D +  I  R  D++   G  +S+ E+E  +  HP V E++VV  ADE  G++  A+V+LK +     + + + ++++   R ++  +  PK I+    LPKT +GKI + +LR
Sbjct:  514 YAN-YYFSGDGAARDRDGFYWILGRVDDVVNVSGHRLSTAEIEAALIEHPIVGESAVVGYADELTGQAVAAYVSLKKDKAVGEDVENIKKEMILTVRKEIGPFAAPKMILLVDDLPKTRSGKIMRRILR 641          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4HBCL_RHOPA (4-hydroxybenzoate--CoA/benzoate--CoA ligase OS=Rhodopseudomonas palustris GN=hbaA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 45/153 (29.41%), Postives = 73/153 (47.71%), Query Frame = 3
Query:   42 IGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLR 497
            IGE+++SG     GY         TF   W  TGD   +  D       R+ DI    G  +S  E+E  +  H  VLEA+V+   D      P AF+ L    D  +   L +++ +  ++ +  +  P+ I +   LPKT++GK+Q+++LR
Sbjct:  359 IGELLVSGGSSAAGYWNQRDKTRTTFVGEWTRTGDKYHRRADGVYTYCGRTDDIFKVSGIWVSPFEIEQALMSHAKVLEAAVIPAEDTDGLIKPKAFIVLASRGD-IDPGALFDELKEHVKSAIGPWKYPRWIQIMDDLPKTSSGKLQRYLLR 510          
The following BLAST results are available for this feature:
BLAST of CX299658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
ACSA_LEPIN6.144e-1132.76Acetyl-coenzyme A synthetase OS=Leptospira interro... [more]
ACSA_LEPIC6.144e-1132.76Acetyl-coenzyme A synthetase OS=Leptospira interro... [more]
ACSA_LEPBP6.144e-1130.11Acetyl-coenzyme A synthetase OS=Leptospira biflexa... [more]
ACSA_LEPBA6.144e-1130.11Acetyl-coenzyme A synthetase OS=Leptospira biflexa... [more]
ACSA_THEEB8.024e-1134.11Acetyl-coenzyme A synthetase OS=Thermosynechococcu... [more]
ACSA_BURS38.024e-1135.66Acetyl-coenzyme A synthetase OS=Burkholderia sp. (... [more]
ACSA1_PSEAE8.024e-1133.60Acetyl-coenzyme A synthetase 1 OS=Pseudomonas aeru... [more]
ACS1_CANAL8.024e-1131.01Acetyl-coenzyme A synthetase 1 OS=Candida albicans... [more]
4HBCL_RHOPA8.024e-1129.414-hydroxybenzoate--CoA/benzoate--CoA ligase OS=Rho... [more]

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Properties
Property NameValue
Genbank descriptionC06024G09SK RindPdig24 Citrus clementina cDNA clone C06024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299658 ID=CX299658; Name=CX299658; organism=Citrus clementina; type=EST; length=683bp
GAGGCTAGACTCAGCAACCTGTTCCTGCTGACGGGAAAACAATTGGAGAA
ATAGTGATGAGTGGTAATGTGGTGATGAAGGGTTACTTAAAGAACCCAAA
AGCCAACGAGGAAACTTTTGCAAATGGATGGTACCATACTGGCGATCTTG
GAGTAAAGCATCCGGATAATTATATAGAAATCAAAGACAGATCAAAGGAC
ATTATCATCTCCGGAGGTGAAAACATCAGTAGCGTGGAGGTAGAGAACAT
GATGTACTTGCACCCGGCAGTTCTTGAGGCATCTGTGGTGGCAAGGGCAG
ATGAGCGTTGGGGAGAGTCTCCTTGTGCTTTCGTGACGTTGAAGCCAGAA
GTGGATAAATCCAACGAGCAACAACTGGCAGAGGATATAATGAAGCTTTG
TCGGGCAAAAATGCCTGCCTACTGGGTTCCAAAGTCAATAGTATTTGGAC
CATTGCCAAAAACTGCTACTGGGAAGATTCAGAAGCATGTGCTAAGGGCT
AAGGCAAAAGAGATGGGACCTGTTAGAAAGAGTAAGCTTTAATCCAATGA
TGATCACAAAAAAAAAAAAGAAACAAATGCTTCTTGTTTTTTCAATTGCC
ATTATAGAAGGATTTTAATCTTCAATAGAATAAAGCTGTAAGTTAATACA
CACTATTTATTCAAATTAAAAAAAAAAAAAAAA
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