CX299658

Overview
NameCX299658
Unique NameCX299658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11699 contig Ccv1_Contig11699:9..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSF2_RAT (Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 63/158 (39.87%), Postives = 85/158 (53.80%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANG-WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKE 512
            GE+ + G  VM+GY   P+   ET     WY TGD+       +  I  RSKD+II GGENI   E+E+  + HP V EA VV   D+R GE  CA + L     KS E    E+I   C+ K+  + +P+ IVF    P T +GKIQK  LR + ++
Sbjct:  459 GELCIRGYCVMQGYWGEPQKTFETVGQDRWYRTGDIASMDEQGFCRIVGRSKDMIIRGGENIYPAELEDFFHKHPQVQEAQVVGVKDDRMGEEICACIRL-----KSGETTTEEEIKAFCKGKISHFKIPRYIVFVEGYPLTVSGKIQKFKLREQMEQ 611          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSF2_HUMAN (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 63/155 (40.65%), Postives = 84/155 (54.19%), Query Frame = 3
Query:   39 TIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            T GE+ + G  VM GY   P+  EE    + WY TGD+   +   + +I  RSKD+II GGENI   E+E+  + HP V E  VV   D+R GE  CA + L     K  E+   E+I   C+ K+  + +PK IVF    P T +GKIQK  LR
Sbjct:  457 TPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRL-----KDGEETTVEEIKAFCKGKISHFKIPKYIVFVTNYPLTISGKIQKFKLR 606          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: FADK_ECOLI (Short-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadK PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 64/153 (41.83%), Postives = 84/153 (54.90%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVLR 497
            GE    G  V  GY   P+         GWY++GDL       YI+I  R KDII+ GGENISS EVE+++  HP + +A VVA +DER GE  CA+V LK      +   L E +    R ++  Y  P+ I V   LP+T +GKIQK +LR
Sbjct:  383 GEEASRGPNVFMGYFDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMSDERLGERSCAYVVLKA---PHHSLSLEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTTSGKIQKFLLR 532          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_OCEIH (2-succinylbenzoate--CoA ligase OS=Oceanobacillus iheyensis GN=menE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 58/152 (38.16%), Postives = 82/152 (53.95%), Query Frame = 3
Query:   42 IGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVL 494
            IGEI++ G +V KGY K  + N+E F N W HTGD+G      Y+ + DR  D+IISGGENI   E+EN++     + EA V    +E WG  P AF+     +   +E ++A  + K     +  Y  PK I V   LP+ A  K+ +H L
Sbjct:  334 IGEILVKGPMVTKGYYKRAETNKEVFENNWLHTGDMGYLDEQGYLYVVDRRNDLIISGGENIYPSEIENVLVQIEGIEEAGVKGSPNEEWGMVPIAFIVCSRPI---SENEIAAHLEKY----LAKYKRPKEIHVVNELPRNAANKLVRHNL 478          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ALKK_PSEOL (Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 55/162 (33.95%), Postives = 92/162 (56.79%), Query Frame = 3
Query:   21 VPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 503
            +P DG++ G ++  G+ V+K Y  +   +  T ++GW+ TGD+     D ++ I DR+KDII SGGE IS+VE+E++   HP +++A+V+A   E+W E P       P     N +  + ++      K+  + +P + +F   LP+  TGKI K+ LR K
Sbjct:  378 LPEDGRSKGNLMARGHWVIKDYFHSDPGS--TLSDGWFSTGDVATIDSDGFMTICDRAKDIIKSGGEWISTVELESIAIAHPHIVDAAVIAARHEKWDERPLLIAVKSP-----NSELTSGEVCNYFADKVARWQIPDAAIFVEELPRNGTGKILKNRLREK 532          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_ENTFA (2-succinylbenzoate--CoA ligase OS=Enterococcus faecalis GN=menE PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 59/165 (35.76%), Postives = 88/165 (53.33%), Query Frame = 3
Query:   36 KTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEMGPVR 527
            K +GEI++ G  V+ GYL N +  E+  A+GW+ TGD+G     +Y+ +  R  ++IISGGENI   EVE ++     +  A+VV   D +WG  P A+V        S+++     I   C  K+  Y  PK I F    P+TA+GKI KH    + +E   +R
Sbjct:  329 KQVGEILLKGPNVVSGYL-NQRQPEKWTADGWFKTGDMGYLDAQSYLYLVSRLSELIISGGENIYPTEVEQVLQAITGIKAAAVVGEPDAQWGAVPVAYVI-------SDQEITLAQIQDQCSRKLAKYKRPKRIYFCHSFPQTASGKIAKHRFMTEEREAFLIR 485          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 61/157 (38.85%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKE 512
            GEI++ G  VMKGY   P+       +GW  TGD+G    + +  I DR KDIII+GG NI   EVE  +Y H A+ E  V    D   GE+  AFV L     K   +   E++    R+++  Y VPK+  F   LPKTA GKI +  L  +  E
Sbjct:  404 GEIIVKGPQVMKGYWNKPEETAAVLRDGWLFTGDMGYMDEEGFFYIADRKKDIIIAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSYRGETVKAFVVL-----KKGAKADTEELDAFARSRLAPYKVPKAYEFRKELPKTAVGKILRRRLLEEETE 555          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CL1_ARATH (4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYW--VPKSIVFGPLPKTATGKIQKHVLRAK 503
            GEI + G+ +MKGYL NP A  ET   +GW HTGD+G+   D+ + I DR K++I   G  ++  E+E ++  HP + + +VVA  +E  GE P AFV       KS + +L+ED +K   +K   ++  + K      +PK  +GKI +  LRAK
Sbjct:  407 GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVV------KSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAK 556          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAK 509
            GE+ + G  VM GY + P A +E   NGW HTGD+ V   + ++ I DR KD+I+  G N+   E+E+++  HP V E + V       GE+   FV       K +     E ++  CR ++  Y VPK + F   LPK+  GKI +  LR +A+
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVV------KKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEAR 554          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAK 509
            GE+ + G  VM GY + P A +E   NGW HTGD+ V   + ++ I DR KD+I+  G N+   E+E+++  HP V E + V       GE+   FV       K +     E ++  CR ++  Y VPK + F   LPK+  GKI +  LR +A+
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVV------KKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEAR 554          
The following BLAST results are available for this feature:
BLAST of CX299658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
ACSF2_RAT6.997e-2339.87Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_HUMAN6.997e-2340.65Acyl-CoA synthetase family member 2, mitochondrial... [more]
FADK_ECOLI2.036e-2241.83Short-chain-fatty-acid--CoA ligase OS=Escherichia ... [more]
MENE_OCEIH4.535e-2238.162-succinylbenzoate--CoA ligase OS=Oceanobacillus i... [more]
ALKK_PSEOL3.839e-2133.95Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas... [more]
MENE_ENTFA8.553e-2135.762-succinylbenzoate--CoA ligase OS=Enterococcus fae... [more]
LCFA_BACSU8.553e-2138.85Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
4CL1_ARATH1.459e-2037.824-coumarate--CoA ligase 1 OS=Arabidopsis thaliana ... [more]
LCFA_ECOLI1.905e-2035.26Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL61.905e-2035.26Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionC06024G09SK RindPdig24 Citrus clementina cDNA clone C06024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299658 ID=CX299658; Name=CX299658; organism=Citrus clementina; type=EST; length=683bp
GAGGCTAGACTCAGCAACCTGTTCCTGCTGACGGGAAAACAATTGGAGAA
ATAGTGATGAGTGGTAATGTGGTGATGAAGGGTTACTTAAAGAACCCAAA
AGCCAACGAGGAAACTTTTGCAAATGGATGGTACCATACTGGCGATCTTG
GAGTAAAGCATCCGGATAATTATATAGAAATCAAAGACAGATCAAAGGAC
ATTATCATCTCCGGAGGTGAAAACATCAGTAGCGTGGAGGTAGAGAACAT
GATGTACTTGCACCCGGCAGTTCTTGAGGCATCTGTGGTGGCAAGGGCAG
ATGAGCGTTGGGGAGAGTCTCCTTGTGCTTTCGTGACGTTGAAGCCAGAA
GTGGATAAATCCAACGAGCAACAACTGGCAGAGGATATAATGAAGCTTTG
TCGGGCAAAAATGCCTGCCTACTGGGTTCCAAAGTCAATAGTATTTGGAC
CATTGCCAAAAACTGCTACTGGGAAGATTCAGAAGCATGTGCTAAGGGCT
AAGGCAAAAGAGATGGGACCTGTTAGAAAGAGTAAGCTTTAATCCAATGA
TGATCACAAAAAAAAAAAAGAAACAAATGCTTCTTGTTTTTTCAATTGCC
ATTATAGAAGGATTTTAATCTTCAATAGAATAAAGCTGTAAGTTAATACA
CACTATTTATTCAAATTAAAAAAAAAAAAAAAA
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