CX299658

Overview
NameCX299658
Unique NameCX299658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11699 contig Ccv1_Contig11699:9..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAK 509
            GE+ + G  VM GY + P A +E   NGW HTGD+ V   + ++ I DR KD+I+  G N+   E+E+++  HP V E + V       GE+   FV       K +     E ++  CR ++  Y VPK + F   LPK+  GKI +  LR +A+
Sbjct:  405 GELCVRGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVV------KKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEAR 554          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: VIBE_VIBCH (Vibriobactin-specific 2,3-dihydroxybenzoate-AMP ligase OS=Vibrio cholerae GN=vibE PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 66/170 (38.82%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   15 QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEMG 518
            QPV A G+  G ++  G   ++GY +  + N+  F A G+Y TGD      + Y+ +  R+KD I  GGE I++ EVEN +  HPAV +A+++A +DE  GE  CA + LKPE    N  QL      L +A +  Y +P  I F   LPKT+ GKI K+ LR +   +G
Sbjct:  375 QPV-ASGEE-GYLLTQGPYTIRGYYRADQHNQRAFNAQGFYITGDKVKLSSEGYVIVTGRAKDQINRGGEKIAAEEVENQLLHHPAVHDAALIAISDEYLGERSCAVIVLKPE-QSVNTIQLKR---FLHQAGLADYKIPDQIQFIDQLPKTSVGKIDKNALRRRFDTLG 538          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: FAT2_YEAST (Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae GN=FAT2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 3
Query:   42 IGEIVMSGNVVMKGYLKNPKANEETFAN--GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEMGPVRKSKL 539
            +GE+ + G  V  GY  NPKAN+E F     ++ TGD G   P+ ++ +  R K++I  GGE IS +E++ +M  HP + EA      D+ +G+   A + L     K  E+   E+++   +  + ++ +P  + F   LPKTATGKIQ+ V+ A+        KSKL
Sbjct:  381 VGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYGQVVQAAIVL-----KKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQRRVI-AETFAKSSRNKSKL 543          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSM2_MOUSE (Acyl-coenzyme A synthetase ACSM2, mitochondrial OS=Mus musculus GN=Acsm2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 55/145 (37.93%), Postives = 77/145 (53.10%), Query Frame = 3
Query:   72 VMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFG-PLPKTATGKIQKHVLRAK 503
            +  GY+ NPK  ++     ++  GD G+K P+ Y     RS DII S G  I   EVEN +  HPAV E +V++  D   GE   AFV L PE    +  QL + + +  ++    Y  P+ + F   LPKT TGKI++  LRAK
Sbjct:  423 MFSGYVDNPKKTQDNIRGDFWLMGDRGIKDPEGYFHFIGRSDDIINSSGYRIGPSEVENALMEHPAVSETAVISSPDPSRGEVVKAFVVLAPEFLSHDRDQLTKVLQEHVKSVTAPYKYPRKVEFVLDLPKTVTGKIERAKLRAK 567          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19
Identity = 59/156 (37.82%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYW--VPKSIVFGPLPKTATGKIQKHVLRAK 503
            GEI + G  +MKGYL NP+A E+T   +GW HTGD+G    D+ I I DR K++I   G  ++  E+E M+  H AV +A+VV   D+  GE P AFV  +      +   + +D +K   AK   ++  + K      +PK  +GKI +  LRAK
Sbjct:  382 GEICIRGKQIMKGYLNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKYKGFQVAPAELEAMLIAHAAVADAAVVPMKDDSCGEIPVAFVVAR------DGSGITDDEIKQYVAKQVVFYKRLHKIFFVDAIPKAPSGKILRKDLRAK 531          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 61/160 (38.12%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF--GPLPKTATGKIQKHVLRAKAKEM 515
            GEI + G+ +MKGYL +P+A   T   +GW HTGD+G    D+ I I DR K++I   G  ++  E+E ++  HP++ +A+VVA  DE   E P AFV       +S   QL ED +K    K   ++    +VF    +PK  +GKI +  LRAK + M
Sbjct:  414 GEICVRGHQLMKGYLNDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKFKGYQVAPAELEALLISHPSIDDAAVVAMKDEVADEVPVAFVA------RSQGSQLTEDDVKSYVNKQVVHYKRIKMVFFIEVIPKAVSGKILRKDLRAKLETM 567          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 64/173 (36.99%), Postives = 94/173 (54.34%), Query Frame = 3
Query:   24 PADGKTIG-----EIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE-RWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF--GPLPKTATGKIQKHVLRAKAKEM 515
            P  GK++G     EI + G  +MKGYL NP+A + T  A GW HTGD+G    D+ I I DR K+II   G  ++  E+E ++  HP++ +A+VV +  E   GE P AFV       K+   +L+ED +K   AK   Y+     VF    +PK  +GKI +  LR + + +
Sbjct:  394 PDTGKSLGRNLPGEICIRGQQIMKGYLNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITHPSIADAAVVGKQIEPEIGEIPVAFVA------KTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDKIPKAPSGKILRKELRKQLQHL 560          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.751e-19
Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF--GPLPKTATGKIQKHVLRAK 503
            GEI + G+ +MKGYL +P+A   T    GW HTGD+G    D+ + I DR K++I   G  ++  E+E ++  HP + +A+VV   DE  GE P AFV       KSN   + ED +K   +K   ++   + VF    +PK  +GKI +  LRA+
Sbjct:  395 GEICIRGDQIMKGYLNDPEATARTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPCISDAAVVPMKDEAAGEVPVAFVV------KSNGHNITEDEIKQFISKQVIFYKRINRVFFVEAIPKAPSGKILRKDLRAR 544          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: LCFA_YERPE (Long-chain-fatty-acid--CoA ligase OS=Yersinia pestis GN=fadD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 54/159 (33.96%), Postives = 86/159 (54.09%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEMG 518
            GE+ + G  VM GY + P A ++   +GW  TGD+     D ++ I DR KD+I+  G N+   E+E ++ LH  VLE++V+   +E  GE+   FV       K++     E+++  CR  +  Y VPK + F   LPK+  GKI +  LR +  ++G
Sbjct:  405 GELWVRGPQVMLGYWQRPDATDDVLKDGWLATGDIATMDEDGFLRIVDRKKDMILVSGFNVYPNEIEEVVALHAKVLESAVIGVPNEVSGEAVKVFVV------KNDASLTPEELLTHCRRYLTGYKVPKIVEFRDELPKSNVGKILRRELRDEEVKVG 557          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CLL1_ORYSJ (4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 61/168 (36.31%), Postives = 88/168 (52.38%), Query Frame = 3
Query:   42 IGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAE-DIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEMGPVRKSKL 539
            +GEI + G  VM+GY  N +A E T   GW HTGDLG       + + DR K++I   G  I+  E+E ++  HP +L+A V+   D + GE P A+V   P      +  L E D+ K    ++  Y   K + F G +PK+A+GKI +  L A+      VR SKL
Sbjct:  397 VGEICVRGPNVMQGYFNNVQATEFTIKQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPDAKAGEVPIAYVVRSP------DSSLTEVDVQKFIEKQVAYYKRLKRVTFVGSVPKSASGKILRRQLIAQ------VRSSKL 552          
The following BLAST results are available for this feature:
BLAST of CX299658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
LCFA_ECO572.489e-2035.26Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
VIBE_VIBCH7.241e-2038.82Vibriobactin-specific 2,3-dihydroxybenzoate-AMP li... [more]
FAT2_YEAST7.241e-2033.73Peroxisomal-coenzyme A synthetase OS=Saccharomyces... [more]
ACSM2_MOUSE9.457e-2037.93Acyl-coenzyme A synthetase ACSM2, mitochondrial OS... [more]
4CL5_ORYSJ1.235e-1937.82Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL4_ARATH1.613e-1938.134-coumarate--CoA ligase 4 OS=Arabidopsis thaliana ... [more]
4CL1_ORYSJ1.613e-1936.99Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]
4CL_VANPL2.751e-1937.184-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
LCFA_YERPE3.593e-1933.96Long-chain-fatty-acid--CoA ligase OS=Yersinia pest... [more]
4CLL1_ORYSJ4.693e-1936.314-coumarate--CoA ligase-like 1 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC06024G09SK RindPdig24 Citrus clementina cDNA clone C06024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299658 ID=CX299658; Name=CX299658; organism=Citrus clementina; type=EST; length=683bp
GAGGCTAGACTCAGCAACCTGTTCCTGCTGACGGGAAAACAATTGGAGAA
ATAGTGATGAGTGGTAATGTGGTGATGAAGGGTTACTTAAAGAACCCAAA
AGCCAACGAGGAAACTTTTGCAAATGGATGGTACCATACTGGCGATCTTG
GAGTAAAGCATCCGGATAATTATATAGAAATCAAAGACAGATCAAAGGAC
ATTATCATCTCCGGAGGTGAAAACATCAGTAGCGTGGAGGTAGAGAACAT
GATGTACTTGCACCCGGCAGTTCTTGAGGCATCTGTGGTGGCAAGGGCAG
ATGAGCGTTGGGGAGAGTCTCCTTGTGCTTTCGTGACGTTGAAGCCAGAA
GTGGATAAATCCAACGAGCAACAACTGGCAGAGGATATAATGAAGCTTTG
TCGGGCAAAAATGCCTGCCTACTGGGTTCCAAAGTCAATAGTATTTGGAC
CATTGCCAAAAACTGCTACTGGGAAGATTCAGAAGCATGTGCTAAGGGCT
AAGGCAAAAGAGATGGGACCTGTTAGAAAGAGTAAGCTTTAATCCAATGA
TGATCACAAAAAAAAAAAAGAAACAAATGCTTCTTGTTTTTTCAATTGCC
ATTATAGAAGGATTTTAATCTTCAATAGAATAAAGCTGTAAGTTAATACA
CACTATTTATTCAAATTAAAAAAAAAAAAAAAA
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