CX299658

Overview
NameCX299658
Unique NameCX299658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11699 contig Ccv1_Contig11699:9..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAED-IMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAK 509
            GE+ + G  VM GY + P A +E   +GW HTGD+ V   D ++ I DR KD+I+  G N+   E+E+++  H  V E + V       GE+   FV  K       +  L +D ++  CR  +  Y VPK + F   LPK+  GKI +  LR +A+
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKDGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKK-------DPALTDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEAR 554          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAED-IMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAK 509
            GE+ + G  VM GY + P A +E   +GW HTGD+ V   D ++ I DR KD+I+  G N+   E+E+++  H  V E + V       GE+   FV  K       +  L +D ++  CR  +  Y VPK + F   LPK+  GKI +  LR +A+
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKDGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKK-------DPALTDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEAR 554          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSM4_RAT (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Rattus norvegicus GN=Acsm4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 3
Query:   84 YLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            Y+ NP+  + T    +Y TGD GV   D Y+    R+ D+IIS G  I   EVE+ +  HPAV+E++VV+  D   GE   AF+ L      SN ++L  ++    +     Y  P+ + F   LPKT TGKI+++VLR
Sbjct:  435 YVDNPEKTDATIRRNFYITGDRGVMDDDGYLWFVGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPFKSSNREKLTAELQDHVKNSTAPYKYPRKVEFVQELPKTITGKIKRNVLR 573          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ENTE_ECOLI (Enterobactin synthase component E OS=Escherichia coli (strain K12) GN=entE PE=3 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 3
Query:   42 IGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVLR 497
            +G ++  G    +GY K+P+ N   F ANG+Y +GDL    P+ YI ++ R KD I  GGE I++ E+EN++  HPAV+ A++V+  DE  GE  CA++ +K  +     ++   +   +   K+P     +      LP TA GK+ K  LR
Sbjct:  380 VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLRE-QGIAEFKLP----DRVECVDSLPLTAVGKVDKKQLR 527          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ENTE_ECO57 (Enterobactin synthase component E OS=Escherichia coli O157:H7 GN=entE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 3
Query:   42 IGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVLR 497
            +G ++  G    +GY K+P+ N   F ANG+Y +GDL    P+ YI ++ R KD I  GGE I++ E+EN++  HPAV+ A++V+  DE  GE  CA++ +K  +     ++   +   +   K+P     +      LP TA GK+ K  LR
Sbjct:  380 VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLRE-QGIAEFKLP----DRVECVDSLPLTAVGKVDKKQLR 527          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CLL7_ARATH (4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPL-PKTATGKIQKHVL 494
            GEI + G  +MKGYL NP+A +ET     W HTGDLG  + D  + + DR K++I   G  ++  E+E ++  HP +L+A V+   DE  GE P AFV   P     N     +DI K    ++  Y   + + F  L PK+A GKI +  L
Sbjct:  390 GEIWVRGPNMMKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSP-----NSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRREL 536          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYW--VPKSIVFGPLPKTATGKIQKHVLRAK 503
            GEI + G  +MKGYL +P+A + T   +GW HTGD+G    D+ I I DR K+II   G  +   E+E ++  HP + +A+VV+  D+  GE P AF+       ++   ++ ED +K   AK   ++  + K      +PK  +GKI +  LRA+
Sbjct:  385 GEICIRGEQIMKGYLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPVAFIV------RTEGSEITEDEIKKFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDLRAR 534          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 54/156 (34.62%), Postives = 88/156 (56.41%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYW--VPKSIVFGPLPKTATGKIQKHVLRAK 503
            GEI + G  +MKGYL +P+A   T    GW HTGD+G    D+ + I DR K++I   G  +   E+E+++  HP++ +A+VV + D+  GE P AFV       ++ +  + E+ +K   +K   ++  + K      +PK+A+GKI +  LRAK
Sbjct:  416 GEICIRGPQIMKGYLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQVPPAELESLLIAHPSIADAAVVPQKDDVAGEVPVAFVV------RAADSDITEESIKEFISKQVVFYKRLHKVHFIHAIPKSASGKILRRELRAK 565          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 55/156 (35.26%), Postives = 87/156 (55.77%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYW--VPKSIVFGPLPKTATGKIQKHVLRAK 503
            GEI + GN +MKGYL +P A   T   +GW HTGD+G    D+ + I DR K++I   G  ++  E+E+++  HP + + +VVA  +E  GE P AFV       +S +  ++ED +K   +K   ++  + K      +PK  +GKI +  LRA+
Sbjct:  400 GEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAFVV------RSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDLRAR 549          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYW--VPKSIVFGPLPKTATGKIQKHVLRAK 503
            GEI + G+ +MKGYL +P+A   T    GW HTGD+G    D+ + I DR K++I   G  ++  E+E ++  HP + +A+VV   DE+ GE P AFV       +SN   + ED +K   +K   ++  V +      +PK+ +GKI +  LRA+
Sbjct:  391 GEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAEIEALLLNHPNISDAAVVPMKDEQAGEVPVAFVV------RSNGSAITEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILRKDLRAR 540          
The following BLAST results are available for this feature:
BLAST of CX299658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
LCFA_SALTY8.005e-1935.03Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI8.005e-1935.03Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
ACSM4_RAT1.046e-1837.41Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
ENTE_ECOLI1.366e-1834.64Enterobactin synthase component E OS=Escherichia c... [more]
ENTE_ECO571.366e-1834.64Enterobactin synthase component E OS=Escherichia c... [more]
4CLL7_ARATH1.366e-1837.504-coumarate--CoA ligase-like 7 OS=Arabidopsis thal... [more]
4CL3_ORYSJ1.366e-1835.26Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
4CL2_ORYSJ1.366e-1834.62Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CL2_ARATH1.366e-1835.264-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
4CL1_TOBAC1.366e-1835.904-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06024G09SK RindPdig24 Citrus clementina cDNA clone C06024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299658 ID=CX299658; Name=CX299658; organism=Citrus clementina; type=EST; length=683bp
GAGGCTAGACTCAGCAACCTGTTCCTGCTGACGGGAAAACAATTGGAGAA
ATAGTGATGAGTGGTAATGTGGTGATGAAGGGTTACTTAAAGAACCCAAA
AGCCAACGAGGAAACTTTTGCAAATGGATGGTACCATACTGGCGATCTTG
GAGTAAAGCATCCGGATAATTATATAGAAATCAAAGACAGATCAAAGGAC
ATTATCATCTCCGGAGGTGAAAACATCAGTAGCGTGGAGGTAGAGAACAT
GATGTACTTGCACCCGGCAGTTCTTGAGGCATCTGTGGTGGCAAGGGCAG
ATGAGCGTTGGGGAGAGTCTCCTTGTGCTTTCGTGACGTTGAAGCCAGAA
GTGGATAAATCCAACGAGCAACAACTGGCAGAGGATATAATGAAGCTTTG
TCGGGCAAAAATGCCTGCCTACTGGGTTCCAAAGTCAATAGTATTTGGAC
CATTGCCAAAAACTGCTACTGGGAAGATTCAGAAGCATGTGCTAAGGGCT
AAGGCAAAAGAGATGGGACCTGTTAGAAAGAGTAAGCTTTAATCCAATGA
TGATCACAAAAAAAAAAAAGAAACAAATGCTTCTTGTTTTTTCAATTGCC
ATTATAGAAGGATTTTAATCTTCAATAGAATAAAGCTGTAAGTTAATACA
CACTATTTATTCAAATTAAAAAAAAAAAAAAAA
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