CX299658

Overview
NameCX299658
Unique NameCX299658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSM3_MOUSE (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Mus musculus GN=Acsm3 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 49/141 (34.75%), Postives = 75/141 (53.19%), Query Frame = 3
Query:   84 YLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 503
            Y+ NP     T    +Y TGD G    D Y     RS DII+S G  I   EVE+ +  HP++ E++VV+  D   GE   AF+ L P+    +++QL ++I +  +     Y  P+ + F   LPKT +GK++++ LR K
Sbjct:  435 YVDNPSKTASTLRGSFYITGDRGYMDEDGYFWFVARSDDIILSSGYRIGPFEVESALIEHPSIAESAVVSSPDPIRGEVVKAFIVLNPDYKSHDQEQLKKEIQEHVKKTTAPYKYPRKVEFIEELPKTVSGKVKRNELRKK 575          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACS2A_HUMAN (Acyl-coenzyme A synthetase ACSM2A, mitochondrial OS=Homo sapiens GN=ACSM2A PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   72 VMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFG-PLPKTATGKIQKHVLRAKAKEM 515
            +  GY+ NP          ++  GD G+K  D Y +   R+ DII S G  I   EVEN +  HPAV+E +V++  D   GE   AFV L  +    + +QL +++ +  ++    Y  P+ I F   LPKT TGKIQ+  LR K  +M
Sbjct:  422 IFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRANDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 570          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 55/157 (35.03%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   39 TIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 503
            T GE+ +    VM+GY  N +  ++T    GW HTGD+G    D  I I DR K++I   G  ++  E+E ++  HP+V + +VV   DE  GE P A V + P   K+ E++  EDI+    A +  Y   +++ F   +PK+ +GKI + +LR K
Sbjct:  384 TSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVVINP---KATEKE--EDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLRDK 535          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAAR (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain MRSA252) GN=menE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 52/150 (34.67%), Postives = 83/150 (55.33%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM GYL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P +++A  V   D+ WG+ P  +   +  + K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNGYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGIIDAVCVGHPDDTWGQVPKLYFVSESNISKA--QLIAYLSQHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSM2_RAT (Acyl-coenzyme A synthetase ACSM2, mitochondrial OS=Rattus norvegicus GN=Acsm2 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 52/145 (35.86%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   72 VMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFG-PLPKTATGKIQKHVLRAK 503
            +  GY+ NPK  +      ++  GD G+K  + Y     R+ DII S G  I   EVEN +  HPAV+E +V++  D    E   AFV L PE    ++ QL + + +  ++    Y  P+ + F   LPKT TGKI++  LRAK
Sbjct:  422 MFSGYVDNPKKTQANIRGDFWLLGDRGIKDTEGYFHFMGRTDDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPIRREVVKAFVVLAPEFLSHDQDQLTKVLQEHVKSVTAPYKYPRKVEFVLDLPKTITGKIERAKLRAK 566          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSM4_HUMAN (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Homo sapiens GN=ACSM4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 52/139 (37.41%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   84 YLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            Y+ NP+    T    +Y TGD GV   D Y     R+ D+IIS G  I   EVE+ +  HPAV+E++VV+  D+  GE   AFV L       N ++L  ++    +     Y  P+ + F   LPKT TGKI+++VLR
Sbjct:  435 YVDNPQKTAATIRGDFYVTGDRGVMDSDGYFWFVGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDQIRGEVVKAFVVLAAPFKSYNPEKLTLELQDHVKKSTAPYKYPRKVEFVQELPKTITGKIKRNVLR 573          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSM3_RAT (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Rattus norvegicus GN=Acsm3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 49/141 (34.75%), Postives = 75/141 (53.19%), Query Frame = 3
Query:   84 YLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 503
            Y+ NP     T    +Y TGD G    D Y     RS D+I+S G  I   EVE+ +  HP++ E++VV+  D   GE   AF+ L P+    +++QL ++I +  +     Y  P+ I F   LPKT +GK++++ LR K
Sbjct:  435 YVDNPSKTASTLRGNFYITGDRGYMDEDGYFWFVARSDDVILSSGYRIGPFEVESALIEHPSIAESAVVSSPDPIRGEVVKAFIVLNPDYKLHDQEQLKKEIQEHVKKTTAPYKYPRKIEFIEELPKTVSGKVKRNELRRK 575          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF--GPLPKTATGKIQKHVLRAK 503
            GEI + G+ +MKGYL +P++   T    GW HTGD+G    D+ + I DR K+II   G  ++  E+E ++  HP + +A+VV   DE+ GE P AFV       ++N     E+ +K   +K   ++     VF    +PK+ +GKI +  LRA+
Sbjct:  387 GEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVV------RTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLRAR 536          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAAW (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain MW2) GN=menE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 52/150 (34.67%), Postives = 83/150 (55.33%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM GYL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P + +A  V   D+ WG+ P  +   + ++ K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNGYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA--QLIAYLSQHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAAS (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain MSSA476) GN=menE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 52/150 (34.67%), Postives = 83/150 (55.33%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM GYL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P + +A  V   D+ WG+ P  +   + ++ K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNGYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA--QLIAYLSQHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
The following BLAST results are available for this feature:
BLAST of CX299658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
ACSM3_MOUSE8.851e-1834.75Acyl-coenzyme A synthetase ACSM3, mitochondrial OS... [more]
ACS2A_HUMAN8.851e-1835.57Acyl-coenzyme A synthetase ACSM2A, mitochondrial O... [more]
4CLL1_ARATH8.851e-1835.034-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
MENE_STAAR1.156e-1734.672-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
ACSM2_RAT1.156e-1735.86Acyl-coenzyme A synthetase ACSM2, mitochondrial OS... [more]
ACSM4_HUMAN1.510e-1737.41Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
ACSM3_RAT1.510e-1734.75Acyl-coenzyme A synthetase ACSM3, mitochondrial OS... [more]
4CL1_PETCR1.510e-1735.264-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
MENE_STAAW1.972e-1734.672-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAS1.972e-1734.672-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC06024G09SK RindPdig24 Citrus clementina cDNA clone C06024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299658 ID=CX299658; Name=CX299658; organism=Citrus clementina; type=EST; length=683bp
GAGGCTAGACTCAGCAACCTGTTCCTGCTGACGGGAAAACAATTGGAGAA
ATAGTGATGAGTGGTAATGTGGTGATGAAGGGTTACTTAAAGAACCCAAA
AGCCAACGAGGAAACTTTTGCAAATGGATGGTACCATACTGGCGATCTTG
GAGTAAAGCATCCGGATAATTATATAGAAATCAAAGACAGATCAAAGGAC
ATTATCATCTCCGGAGGTGAAAACATCAGTAGCGTGGAGGTAGAGAACAT
GATGTACTTGCACCCGGCAGTTCTTGAGGCATCTGTGGTGGCAAGGGCAG
ATGAGCGTTGGGGAGAGTCTCCTTGTGCTTTCGTGACGTTGAAGCCAGAA
GTGGATAAATCCAACGAGCAACAACTGGCAGAGGATATAATGAAGCTTTG
TCGGGCAAAAATGCCTGCCTACTGGGTTCCAAAGTCAATAGTATTTGGAC
CATTGCCAAAAACTGCTACTGGGAAGATTCAGAAGCATGTGCTAAGGGCT
AAGGCAAAAGAGATGGGACCTGTTAGAAAGAGTAAGCTTTAATCCAATGA
TGATCACAAAAAAAAAAAAGAAACAAATGCTTCTTGTTTTTTCAATTGCC
ATTATAGAAGGATTTTAATCTTCAATAGAATAAAGCTGTAAGTTAATACA
CACTATTTATTCAAATTAAAAAAAAAAAAAAAA
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