CX299658

Overview
NameCX299658
Unique NameCX299658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAA2 (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain JH1) GN=menE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 52/150 (34.67%), Postives = 83/150 (55.33%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM GYL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P + +A  V   D+ WG+ P  +   + ++ K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNGYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA--QLIAYLSKHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAA1 (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=menE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 52/150 (34.67%), Postives = 83/150 (55.33%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM GYL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P + +A  V   D+ WG+ P  +   + ++ K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNGYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA--QLIAYLSKHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: LCFA_HAEIN (Long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae GN=fadD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 54/152 (35.53%), Postives = 80/152 (52.63%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            GE+ + G+ VM+GY + P+A  E   +GW  TGD+ +      + I DR KDII+  G N+   E+E+++ L+  V EA  +       GE      T+K  V K ++    +++   CR  +  Y VPK I F   LPKT  GKI + VLR
Sbjct:  407 GELWVKGDQVMRGYWQRPEATSEVLKDGWMATGDIVIMDESYSLRIVDRKKDIILVSGFNVYPNEIEDVVMLNYKVSEAVAIGVPHAVSGE------TIKIFVVKKDDSLTRDELRNHCRQYLTGYKVPKEIEFRDELPKTNVGKILRRVLR 552          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_LACLA (2-succinylbenzoate--CoA ligase OS=Lactococcus lactis subsp. lactis GN=menE PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 56/158 (35.44%), Postives = 86/158 (54.43%), Query Frame = 3
Query:   27 ADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR 497
            AD   +GEI +   ++MK YL      ++ +    + TGD+G    D ++ + +R KDIIISGGENI   E+E+++Y  P + E ++VA+ D +WG+ P  FV+        N  Q  E +      K+  Y  P+SI F   LPK A+GKI +  L+
Sbjct:  308 ADLAGVGEIWLKSPMLMKAYL-----GQKPYGTA-FETGDIGYLDTDGFLYLLNRRKDIIISGGENIYPKEIEDLVYSLPEIKECALVAKPDAKWGQVPILFVS-------GNISQ--EKLENFLTEKLAKYKRPQSITFMDELPKNASGKILRKELK 450          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: DHBE_BACSU (2,3-dihydroxybenzoate-AMP ligase OS=Bacillus subtilis GN=dhbE PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 53/158 (33.54%), Postives = 83/158 (52.53%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKE 512
            G ++  G   ++GY K  + N  +F  +G+Y TGD+     D YI ++ R+KD I  GGE +++ EVEN +  HPAV +A++V+  D+  GE  C F+  + E  K+ E +       L    + AY +P  + F    P+T  GK+ K  LR    E
Sbjct:  379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAF-----LRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: ACSM1_MOUSE (Acyl-coenzyme A synthetase ACSM1, mitochondrial OS=Mus musculus GN=Acsm1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 3
Query:   84 YLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 503
            Y  +P++  E     +Y++GD      + YI    R  D+I + G  I  VEVEN +  HPAV E++VV+  D+  GE   AF+ L PE    +++QL +++    ++    Y  P+ + F   LPKT TGKI++  LR K
Sbjct:  428 YENSPESTSEVECGDFYNSGDRATIDEEGYIWFLGRGDDVINASGYRIGPVEVENALAEHPAVAESAVVSSPDKDRGEVVKAFIVLNPEFLSHDQEQLIKELQHHVKSVTAPYKYPRKVEFVSELPKTVTGKIKRKELRNK 568          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAEQ (2-succinylbenzoate--CoA ligase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=menE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 57/166 (34.34%), Postives = 91/166 (54.82%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFAN-GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMK-LCRAKMP-AYWVPKSIVFGPLPKTATGKIQKHVLRAKAKEMGPVRKS 533
            GE+++ G  VM GYL  PK  ++TF N G++ TGD+     + Y+ I DR KD+IISGGENI   ++E +      + +A  V  +D+ WG+ P  +     ++   N+ +L E     L R K+P  Y+  KS     LP T+TGK+Q+  ++++    G   +S
Sbjct:  318 GELLIKGENVMNGYLY-PKYLKDTFDNDGYFQTGDIAEIDDEGYVIIYDRRKDLIISGGENIYPYQIETIAKDFEGIEDAVCVGISDDTWGQVPILYYVTNQDI---NQTELIEHFENHLARYKIPKKYYQVKS-----LPYTSTGKLQRKKVKSEDLNEGKNNES 474          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAAU (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus GN=menE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM  YL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P + +A  V   D+ WG+ P  +   + ++ K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNVYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA--QLIAYLSQHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAAT (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=menE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM  YL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P + +A  V   D+ WG+ P  +   + ++ K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNVYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA--QLIAYLSQHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
BLAST of CX299658 vs. ExPASy Swiss-Prot
Match: MENE_STAAE (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain Newman) GN=menE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   45 GEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKLCRAKMPAYWVPKSIVFGPLPKTATGKIQKHVL 494
            GE+++ G  VM  YL  P     TF NG+++TGD+     + Y+ I DR KD+IISGGENI   ++E +    P + +A  V   D+ WG+ P  +   + ++ K+  Q +A     L + K+P ++         LP T+TGK+Q++ L
Sbjct:  347 GELMIKGANVMNVYLY-PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKA--QLIAYLSQHLAKYKVPKHFEK----VDTLPYTSTGKLQRNKL 489          
The following BLAST results are available for this feature:
BLAST of CX299658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
MENE_STAA22.575e-1734.672-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAA12.575e-1734.672-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
LCFA_HAEIN3.363e-1735.53Long-chain-fatty-acid--CoA ligase OS=Haemophilus i... [more]
MENE_LACLA4.393e-1735.442-succinylbenzoate--CoA ligase OS=Lactococcus lact... [more]
DHBE_BACSU4.393e-1733.542,3-dihydroxybenzoate-AMP ligase OS=Bacillus subti... [more]
ACSM1_MOUSE9.786e-1734.75Acyl-coenzyme A synthetase ACSM1, mitochondrial OS... [more]
MENE_STAEQ1.669e-1634.342-succinylbenzoate--CoA ligase OS=Staphylococcus e... [more]
MENE_STAAU2.180e-1634.002-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAT2.180e-1634.002-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAE2.180e-1634.002-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC06024G09SK RindPdig24 Citrus clementina cDNA clone C06024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299658 ID=CX299658; Name=CX299658; organism=Citrus clementina; type=EST; length=683bp
GAGGCTAGACTCAGCAACCTGTTCCTGCTGACGGGAAAACAATTGGAGAA
ATAGTGATGAGTGGTAATGTGGTGATGAAGGGTTACTTAAAGAACCCAAA
AGCCAACGAGGAAACTTTTGCAAATGGATGGTACCATACTGGCGATCTTG
GAGTAAAGCATCCGGATAATTATATAGAAATCAAAGACAGATCAAAGGAC
ATTATCATCTCCGGAGGTGAAAACATCAGTAGCGTGGAGGTAGAGAACAT
GATGTACTTGCACCCGGCAGTTCTTGAGGCATCTGTGGTGGCAAGGGCAG
ATGAGCGTTGGGGAGAGTCTCCTTGTGCTTTCGTGACGTTGAAGCCAGAA
GTGGATAAATCCAACGAGCAACAACTGGCAGAGGATATAATGAAGCTTTG
TCGGGCAAAAATGCCTGCCTACTGGGTTCCAAAGTCAATAGTATTTGGAC
CATTGCCAAAAACTGCTACTGGGAAGATTCAGAAGCATGTGCTAAGGGCT
AAGGCAAAAGAGATGGGACCTGTTAGAAAGAGTAAGCTTTAATCCAATGA
TGATCACAAAAAAAAAAAAGAAACAAATGCTTCTTGTTTTTTCAATTGCC
ATTATAGAAGGATTTTAATCTTCAATAGAATAAAGCTGTAAGTTAATACA
CACTATTTATTCAAATTAAAAAAAAAAAAAAAA
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