CX299659

Overview
NameCX299659
Unique NameCX299659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.180e-18
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 296
            ED+  +EKI A+N+LE+Y +NMK+ ++D+  L  K+   +K KI +   E L WL+ NQ AEK++++ K KE+E VCNPIIT +YQ     P  GT
Sbjct:  530 EDEVQREKIAAKNALESYAFNMKSAVSDEG-LQGKISESDKKKILSKCNEVLLWLEANQLAEKDEFDHKRKELEQVCNPIITKLYQGGCTGPSCGT 624          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17
Identity = 43/93 (46.24%), Postives = 66/93 (70.97%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            ED+K ++++ A+NSLE+YVY MK Q+  + +L +K+   ++  I +  ++ + WLD +QSAEK +YE K +E+E VC PIIT VYQ +GG PG
Sbjct:  526 EDEKQRDRVSAKNSLESYVYTMKQQV--EGELKEKIPESDRQVIISKCEDTISWLDVHQSAEKHEYESKREELEKVCAPIITKVYQ-AGGMPG 615          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP71_PONAB (Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 293
            ED+  +E++ A+N+LE+Y +NMK+ + D+  L  K+   +K K+    +E + WLD N  AEK+++E K KE+E VCNPII+ +YQ +GG PG G
Sbjct:  528 EDEVQRERVSAKNALESYAFNMKSAVEDEG-LKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAGG-PGPG 620          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 293
            ED+  +E++ A+N+LE+Y +NMK+ + D+  L  K+   +K K+    +E + WLD N  AEK+++E K KE+E VCNPII+ +YQ +GG PG G
Sbjct:  528 EDEVQRERVSAKNALESYAFNMKSAVEDEG-LKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAGG-PGPG 620          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 40/92 (43.48%), Postives = 66/92 (71.74%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQRSG 275
            AEEDK  +E+I+ARN LE Y +++KNQ+ND+D L  K++ ++K+ I  AVKEA +WL++N  +A  ED++E+ +++  V  PI + +Y + G
Sbjct:  558 AEEDKATRERIEARNGLENYAFSLKNQVNDEDGLGGKIDEEDKETILDAVKEAQDWLEENAATASAEDFDEQKEKLSNVAYPITSKLYSQGG 649          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: GRP78_ASPNG (78 kDa glucose-regulated protein homolog OS=Aspergillus niger GN=bipA PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP 284
            AEEDK +K KI+ARN+LE Y +++KNQ+ND++ L  +++ D+K  I  AVKE  EWL+DN  +A  ED+EE+ +++  V  PI + +Y   G AP
Sbjct:  568 AEEDKAIKAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLY---GSAP 659          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: GRP78_ASPKA (78 kDa glucose-regulated protein homolog OS=Aspergillus kawachi GN=bipA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP 284
            AEEDK +K KI+ARN+LE Y +++KNQ+ND++ L  +++ D+K  I  AVKE  EWL+DN  +A  ED+EE+ +++  V  PI + +Y   G AP
Sbjct:  568 AEEDKAIKAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLY---GSAP 659          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: GRP78_ASPAW (78 kDa glucose-regulated protein homolog OS=Aspergillus awamori GN=bipA PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP 284
            AEEDK +K KI+ARN+LE Y +++KNQ+ND++ L  +++ D+K  I  AVKE  EWL+DN  +A  ED+EE+ +++  V  PI + +Y   G AP
Sbjct:  568 AEEDKAIKAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLY---GSAP 659          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP70_PLEWA (Heat shock 70 kDa protein OS=Pleurodeles waltlii GN=HSP70 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            +D+  +EK+ A+N+LE+  +NMK+ + + D L DK+  D++ KI     + + W+++NQ AEKE+YE + KE+E VCN IIT +YQ  GG PG
Sbjct:  530 DDEAQREKVSAKNTLESIAFNMKSTV-EGDNLKDKISEDDRKKIVDKCNQTISWMENNQMAEKEEYEHQQKELEKVCNSIITKLYQ--GGMPG 619          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP70_NEUCR (Heat shock 70 kDa protein OS=Neurospora crassa GN=hsps-1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 39/94 (41.49%), Postives = 70/94 (74.47%), Query Frame = 3
Query:    6 EEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            EED+   +++ A+N LE+Y Y+++N ++D  K+ +KL++ +K+K+++ + + + WLD+NQ A +E+YEE+ KE+EA+ NPI+   Y  +GGAPG
Sbjct:  526 EEDEAEAKRVAAKNGLESYAYSLRNTLSDS-KVDEKLDAADKEKLKSEIDKIVAWLDENQQATREEYEERQKELEAIANPIMMKFY-GAGGAPG 617          
The following BLAST results are available for this feature:
BLAST of CX299659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
HS71L_BOVIN8.180e-1845.83Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
HSP70_SCHMA1.068e-1746.24Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]
HSP71_PONAB1.395e-1744.21Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSP... [more]
HSP71_HUMAN1.395e-1744.21Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN... [more]
GRP78_NEUCR1.395e-1743.4878 kDa glucose-regulated protein homolog OS=Neuros... [more]
GRP78_ASPNG1.395e-1746.3278 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPKA1.395e-1746.3278 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPAW1.395e-1746.3278 kDa glucose-regulated protein homolog OS=Asperg... [more]
HSP70_PLEWA1.822e-1744.09Heat shock 70 kDa protein OS=Pleurodeles waltlii G... [more]
HSP70_NEUCR1.822e-1741.49Heat shock 70 kDa protein OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06024G10SK RindPdig24 Citrus clementina cDNA clone C06024G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299659 ID=CX299659; Name=CX299659; organism=Citrus clementina; type=EST; length=576bp
TTGCCGAGGAGGACAAGAAAGTAAAGGAGAAGATCGATGCTCGCAACAGC
CTTGAGACCTATGTCTATAACATGAAAAACCAGATTAATGACAAGGACAA
GCTTGCCGACAAGCTCGAATCTGATGAGAAGGACAAGATTGAAACTGCTG
TAAAGGAAGCCCTTGAATGGCTCGATGACAACCAGAGCGCAGAGAAAGAG
GACTATGAAGAGAAGCTCAAGGAGGTTGAAGCCGTTTGCAACCCCATCAT
CACTGCTGTATATCAGAGATCTGGCGGAGCCCCCGGTGCTGGCACTGAAT
CATCGGATGATGATGATTCACACGATGAGCTCTAAAGAATTTTTACTTCG
ATTGACCATATTGCCAAAACTGTCAAGAGGCTAAAATTGAGTAAAATAGG
CTTTTTAGATTATCTGAGGGTACTTACTGTAATTTTTCTCGTGGTAGGAG
AAGTAAAAGGGAGGCGGAATTTCCCTTTCTTCGCGTGTTTTTTTGGATGT
GAAGATACTTTAAAGGATCTTTTCTTATTTCATTACTAGTGTTTCCTTCA
ATATTAAAAAAAAAAAAAAAAAAAAA
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