CX299659

Overview
NameCX299659
Unique NameCX299659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 36/87 (41.38%), Postives = 67/87 (77.01%), Query Frame = 3
Query:    6 EEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 266
            E+D++ KE+I+++N+LE Y++++KN IND+ K+  KL   +K+ IE+  +  L+WL+ NQSAEK+++ +K+ ++E++ NPI++  YQ
Sbjct:  528 EQDQQQKERIESKNNLENYIFSVKNSINDQ-KIISKLSKSDKNIIESETESTLKWLESNQSAEKDEFNQKISDLESIVNPILSKFYQ 613          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 296
            ED+  +EKI A+N+LE+Y +NMK+ ++D+  L  K+   +K+KI     E L WL+ NQ AEK++++ K KE+E +CNPIIT +YQ     P  GT
Sbjct:  530 EDEVQREKIAAKNALESYAFNMKSVVSDEG-LKGKISESDKNKILDKCNELLSWLEVNQLAEKDEFDHKRKELEQMCNPIITKLYQGGCTGPACGT 624          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.380e-17
Identity = 37/95 (38.95%), Postives = 67/95 (70.53%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 293
            ED++  +++ A+N LE+Y + +KN +++ +   +K+  ++  K+E A ++A+ WLD +Q+A  E+Y+E+ KE+E V NPI++  Y  +GGAPGAG
Sbjct:  526 EDEQEAQRVQAKNQLESYAFTLKNSVSENN-FKEKVGEEDARKLEAAAQDAINWLDASQAASTEEYKERQKELEGVANPIMSKFYGAAGGAPGAG 619          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.380e-17
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP 284
            ED+  +EKI A+N+LE+Y +NMK+ + D+  L DK+   +K KI     E L WL+ NQ AEKE+++ K KE+E +CNPIIT +YQ     P
Sbjct:  530 EDEGQREKIAAKNALESYAFNMKSAVGDEG-LKDKISESDKKKILDKCSEVLSWLEANQLAEKEEFDHKRKELENMCNPIITKLYQSGCTGP 620          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.380e-17
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 296
            ED+  +EKI A+N+LE+Y +NMK+ ++D+  L  K+   +K KI     E L WL+ NQ AEK++++ K KE+E +CNPIIT +YQ     P  GT
Sbjct:  530 EDEVQREKIAAKNALESYAFNMKSVVSDEG-LKGKISESDKKKILDKCNELLSWLEANQLAEKDEFDHKRKELEQMCNPIITKLYQGGCTGPACGT 624          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 293
            ED+  +E++ A+N+LE+Y  NMK+ + D+  L  K+   +K K+    +E + WLD N  AEK+++E K KE+E VCNPII+ +YQ  GG PG G
Sbjct:  525 EDEVQRERVSAKNALESYALNMKSAVEDEG-LKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQ-GGGGPGPG 617          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 293
            ED+  +E++ A+N+LE+Y +NMK+ + D+  L  K+   +K K+    +E + WLD N  AEK+++E K KE+E VCNPII+ +YQ +GG PG G
Sbjct:  528 EDEIQRERVGAKNALESYAFNMKSVVEDEG-LKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAGG-PGPG 620          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: GRP78_YARLI (78 kDa glucose-regulated protein homolog OS=Yarrowia lipolytica GN=KAR2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQ-SAEKEDYEEKLKEVEAVCNPIITAVYQRSGG 278
            AEED  ++E I+A+NSLE Y ++++NQ+ DK  L  K+ +D+K+ +  AV E LEWL+ N  SA KED+EEK + + A+  PI + +Y+   G
Sbjct:  556 AEEDALIRETIEAKNSLENYAHSLRNQVADKSGLGGKISADDKEALNDAVTETLEWLEANSVSATKEDFEEKKEALSAIAYPITSKIYEGGEG 648          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: GRP78_PIG (78 kDa glucose-regulated protein (Fragment) OS=Sus scrofa GN=HSPA5 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 39/69 (56.52%), Postives = 55/69 (79.71%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYE 209
            AEEDKK+KE+ID RN LE+Y Y +KNQI DK+KL  KL S++K+ +E AV+E +EWL+ +Q A+ ED++
Sbjct:  193 AEEDKKLKERIDTRNELESYAYCLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFK 261          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP71_YEAST (Heat shock protein SSA1 OS=Saccharomyces cerevisiae GN=SSA1 PE=1 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 4.060e-17
Identity = 40/94 (42.55%), Postives = 66/94 (70.21%), Query Frame = 3
Query:    6 EEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            EED+K  ++I ++N LE+  Y++KN I++     DKLE  +KD +    +E + WLD N +A KE++++KLKE++ + NPI++ +YQ +GGAPG
Sbjct:  524 EEDEKESQRIASKNQLESIAYSLKNTISEA---GDKLEQADKDTVTKKAEETISWLDSNTTASKEEFDDKLKELQDIANPIMSKLYQ-AGGAPG 613          
The following BLAST results are available for this feature:
BLAST of CX299659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
HS7C3_DICDI1.822e-1741.38Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
HS71L_HUMAN1.822e-1744.79Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]
HSP74_YEAST2.380e-1738.95Heat shock protein SSA4 OS=Saccharomyces cerevisia... [more]
HS71L_RAT2.380e-1746.74Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_MACFA2.380e-1744.79Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
HSP71_CERAE3.108e-1744.21Heat shock 70 kDa protein 1 OS=Cercopithecus aethi... [more]
HS71A_PIG3.108e-1744.21Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
GRP78_YARLI3.108e-1744.0978 kDa glucose-regulated protein homolog OS=Yarrow... [more]
GRP78_PIG3.108e-1756.5278 kDa glucose-regulated protein (Fragment) OS=Sus... [more]
HSP71_YEAST4.060e-1742.55Heat shock protein SSA1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC06024G10SK RindPdig24 Citrus clementina cDNA clone C06024G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299659 ID=CX299659; Name=CX299659; organism=Citrus clementina; type=EST; length=576bp
TTGCCGAGGAGGACAAGAAAGTAAAGGAGAAGATCGATGCTCGCAACAGC
CTTGAGACCTATGTCTATAACATGAAAAACCAGATTAATGACAAGGACAA
GCTTGCCGACAAGCTCGAATCTGATGAGAAGGACAAGATTGAAACTGCTG
TAAAGGAAGCCCTTGAATGGCTCGATGACAACCAGAGCGCAGAGAAAGAG
GACTATGAAGAGAAGCTCAAGGAGGTTGAAGCCGTTTGCAACCCCATCAT
CACTGCTGTATATCAGAGATCTGGCGGAGCCCCCGGTGCTGGCACTGAAT
CATCGGATGATGATGATTCACACGATGAGCTCTAAAGAATTTTTACTTCG
ATTGACCATATTGCCAAAACTGTCAAGAGGCTAAAATTGAGTAAAATAGG
CTTTTTAGATTATCTGAGGGTACTTACTGTAATTTTTCTCGTGGTAGGAG
AAGTAAAAGGGAGGCGGAATTTCCCTTTCTTCGCGTGTTTTTTTGGATGT
GAAGATACTTTAAAGGATCTTTTCTTATTTCATTACTAGTGTTTCCTTCA
ATATTAAAAAAAAAAAAAAAAAAAAA
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