CX299659

Overview
NameCX299659
Unique NameCX299659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP74_TRYBB (Heat shock 70 kDa protein 4 OS=Trypanosoma brucei brucei PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 293
            EDK     IDA+N LE Y ++MKN IND + +A KL+  +K+ + TAV+EAL WL+DNQ A  E+Y  + KE+E VC PI++ +YQ  GG  G G
Sbjct:  531 EDKAHVXXIDAKNGLENYAFSMKNTINDPN-VAGKLDDADKNAVTTAVEEALRWLNDNQEASLEEYNHRQKELEGVCAPILSKMYQGMGGGDGPG 624          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP70_BRELC (Heat shock 70 kDa protein OS=Bremia lactucae GN=HSP70 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            ED+  K +I+A+N LE Y YN++N +ND +KL D++  D+K  IE  V E + WLD NQSAEKE+YE K KE+E + NPI+  +Y  +G A G
Sbjct:  531 EDEANKIRIEAKNGLENYSYNLRNTLND-EKLKDQIPEDDKKAIEDKVTETINWLDANQSAEKEEYEGKQKELEGIANPILQKMYAAAGAAGG 622          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 44/93 (47.31%), Postives = 69/93 (74.19%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            ED+    +I A+N LE+Y Y+++N ++D + L DK+++ +K+ I+ AVKE +EWLD N +A K++YE+K KE+E V NPI+  +YQ +GGAPG
Sbjct:  526 EDEAETSRIQAKNHLESYAYSLRNSLDDPN-LKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ-AGGAPG 616          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP70_SCHJA (Heat shock 70 kDa protein (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 47/93 (50.54%), Postives = 69/93 (74.19%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKL-ESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP 284
            ED+K K +I A+NSLE+YVY+MK  + + D++ DK+ ESD K++I +  +E + W+D+NQ AEKE++EEK  E+E VC PIITA+ +  GG P
Sbjct:   83 EDEKQKNRICAKNSLESYVYSMKQSV-EGDEMKDKISESDRKNRILSKCEETIRWMDNNQLAEKEEFEEKKSELEKVCMPIITAMNRAGGGVP 174          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 43/93 (46.24%), Postives = 65/93 (69.89%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            ED+K ++K+ ++NSL++Y +NMK  + D +KL  K+  ++   I     E + WLD NQ+AEKE++E + KE+E VCNPIIT +YQ +GG PG
Sbjct:  528 EDEKQRDKVSSKNSLDSYAFNMKATVED-EKLPGKILDEDHQNILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP70_TRYCR (Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 46/91 (50.55%), Postives = 65/91 (71.43%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA 281
            EDK    +IDA+N LE Y ++MKN +ND + +A K+E  +K  I +AV+EALEWL++NQ A KE+YE + KE+E +C PI+T +YQ   GA
Sbjct:  531 EDKDQVRQIDAKNGLENYAFSMKNAVNDPN-VAGKIEEADKKTITSAVEEALEWLNNNQEASKEEYEHRQKELENLCTPIMTNMYQGMAGA 620          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP70_ACHKL (Heat shock 70 kDa protein OS=Achlya klebsiana GN=HSP70 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            ED+    +I+A+N LE Y YN++N +ND +KL  K++  +K  I+  V + + WLD NQSAEKE++E K KE+E + NPI+  +Y  +GGAPG
Sbjct:  531 EDEANNVRIEAKNGLENYAYNLRNTLND-EKLQGKIDESDKKVIDDKVTDIINWLDHNQSAEKEEFEAKQKELEGIANPIMQKMYAAAGGAPG 622          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP7D_CAEEL (Heat shock 70 kDa protein D OS=Caenorhabditis elegans GN=hsp-4 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 3
Query:    3 AEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 299
            A +D+  KEK+++RN LE Y Y MK QI DK+KL  KL  ++K  IE+AV+ A+EWL  NQ A  E+ +E+ KE+E+V  PI++ +Y   G    A  E
Sbjct:  551 AADDQAQKEKVESRNELEAYAYQMKTQIADKEKLGGKLTDEDKVSIESAVERAIEWLGSNQDASTEENKEQKKELESVVQPIVSKLYSAGGQGEQASEE 649          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP70_THEAN (Heat shock 70 kDa protein OS=Theileria annulata GN=TA11610 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 44/94 (46.81%), Postives = 69/94 (73.40%), Query Frame = 3
Query:    6 EEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 287
            EED+K +  +++R+ LE Y Y+MKN +++ D++  KL +DE D   + + +AL+W++ NQ AE ++YE+KLK VE VCNP++T +YQ SG APG
Sbjct:  528 EEDEKRRRCVESRHKLENYCYSMKNTLSE-DQVKQKLGADEVDSALSTITDALKWVEANQLAEHDEYEDKLKHVEGVCNPLVTKLYQ-SGAAPG 619          
BLAST of CX299659 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 3
Query:    9 EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 296
            ED+  ++++ A+NSLE+Y YNMK  + D +KL  K+   +K K+    +E +  LD NQ AEKE+YE K KE+E +CNPI+T +YQ +GGA   G+
Sbjct:  531 EDEANRDRVGAKNSLESYTYNMKQTVED-EKLKGKISDQDKQKVLDKCQEVISSLDRNQMAEKEEYEHKQKELEKLCNPIVTKLYQGAGGAGAGGS 625          
The following BLAST results are available for this feature:
BLAST of CX299659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
HSP74_TRYBB8.740e-2049.47Heat shock 70 kDa protein 4 OS=Trypanosoma brucei ... [more]
HSP70_BRELC8.740e-2049.46Heat shock 70 kDa protein OS=Bremia lactucae GN=HS... [more]
HSP71_SCHPO1.141e-1947.31Probable heat shock protein ssa1 OS=Schizosaccharo... [more]
HSP70_SCHJA1.141e-1950.54Heat shock 70 kDa protein (Fragment) OS=Schistosom... [more]
HSP7C_CHICK1.491e-1946.24Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP70_TRYCR1.491e-1950.55Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=... [more]
HSP70_ACHKL2.543e-1946.24Heat shock 70 kDa protein OS=Achlya klebsiana GN=H... [more]
HSP7D_CAEEL3.321e-1945.45Heat shock 70 kDa protein D OS=Caenorhabditis eleg... [more]
HSP70_THEAN3.321e-1946.81Heat shock 70 kDa protein OS=Theileria annulata GN... [more]
HSP70_CHICK3.321e-1945.83Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC06024G10SK RindPdig24 Citrus clementina cDNA clone C06024G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299659 ID=CX299659; Name=CX299659; organism=Citrus clementina; type=EST; length=576bp
TTGCCGAGGAGGACAAGAAAGTAAAGGAGAAGATCGATGCTCGCAACAGC
CTTGAGACCTATGTCTATAACATGAAAAACCAGATTAATGACAAGGACAA
GCTTGCCGACAAGCTCGAATCTGATGAGAAGGACAAGATTGAAACTGCTG
TAAAGGAAGCCCTTGAATGGCTCGATGACAACCAGAGCGCAGAGAAAGAG
GACTATGAAGAGAAGCTCAAGGAGGTTGAAGCCGTTTGCAACCCCATCAT
CACTGCTGTATATCAGAGATCTGGCGGAGCCCCCGGTGCTGGCACTGAAT
CATCGGATGATGATGATTCACACGATGAGCTCTAAAGAATTTTTACTTCG
ATTGACCATATTGCCAAAACTGTCAAGAGGCTAAAATTGAGTAAAATAGG
CTTTTTAGATTATCTGAGGGTACTTACTGTAATTTTTCTCGTGGTAGGAG
AAGTAAAAGGGAGGCGGAATTTCCCTTTCTTCGCGTGTTTTTTTGGATGT
GAAGATACTTTAAAGGATCTTTTCTTATTTCATTACTAGTGTTTCCTTCA
ATATTAAAAAAAAAAAAAAAAAAAAA
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