CX299661

Overview
NameCX299661
Unique NameCX299661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:679..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            L + STPN  +P++   +P+L +DVWEHAYYL +QNRRP+YI+ F + +V+W+ V+KR   AKA
Sbjct:  141 LEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPEYIAAFWN-VVNWDEVAKRYSEAKA 203          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.483e-13
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    3 SLLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            +L +V+TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:  137 NLEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            L +VST NA  PL  D +PLLT+DVWEHAYY+D++N RP+Y+  F   LV+WE V+K L
Sbjct:  134 LAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPNYLEHFW-ALVNWEFVAKNL 191          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            L +VST NA  PL  D +PLLT+DVWEHAYY+D++N RP+Y+  F   LV+WE V+K L
Sbjct:  134 LAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPNYLEHFW-ALVNWEFVAKNL 191          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            L +VST NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:  134 LAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 191
            L +  TPN  NPLV   +P+L +DVWEH+YY+D++N RP Y+  F+D L++W+ V +  E+A
Sbjct:  137 LEISKTPNGENPLVHGATPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYEAA 198          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            L +VST NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:  134 LAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            L +VST NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:  134 LAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            L +VST NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:  134 LAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
The following BLAST results are available for this feature:
BLAST of CX299661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SODM_BACST4.198e-1351.56Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]
SODM_STAEP5.483e-1353.97Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAXY7.160e-1351.56Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]
SODF_SALTY7.160e-1357.63Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI7.160e-1357.63Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODF_SHIFL1.221e-1257.63Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_RHIME1.221e-1246.77Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODF_ECOLI1.221e-1257.63Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL61.221e-1257.63Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]
SODF_ECO571.221e-1257.63Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionC06024G12SK RindPdig24 Citrus clementina cDNA clone C06024G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299661 ID=CX299661; Name=CX299661; organism=Citrus clementina; type=EST; length=548bp
AGAGCCTTTTAGTGGTGTCGACTCCCAATGCTGTCAATCCTCTTGTCTGG
GATTACTCGCCGCTCCTTACTATTGATGTATGGGAGCATGCTTATTACCT
CGACTTTCAGAATCGACGACCTGATTACATATCAGTTTTCATGGATAAGC
TTGTATCATGGGAATCAGTAAGTAAAAGACTGGAATCAGCCAAAGCTCCA
GCTACCTAGATTGAAATGGAAGAATGATGAAGGAAGATGAAGAGAAAATA
AATAATAAGCTGCTTGGTAGCAACACTATGTTGTGCTGATGATACTTTGC
TGAACAATAAAAATAGTTAGGTCTTTGGTACACACTACTTTGTGATTAGT
AATCTCTATTGTCAAAGTGTTGGTTTCTTCTTATAACAATCAGGGTATAA
TAAAACCTATCAAAGTATATGTATGAGTTACTTTTTGAAAATAGTTTTTG
GATGACTAATATTACTTTCAGGCCTGTTTAGTATGTTGAATACTATTATC
TTGGACTATAAATTATATTTTTAATAATCAATCAATAATTGTATTTTT
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