CX299661

Overview
NameCX299661
Unique NameCX299661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:679..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   + K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNATK 199          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L V STPN  +PL    +P++ +DVWEHAYYL++QNRRPDYI  F + +V W +  KR + AK
Sbjct:  157 LEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQEAK 218          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L V STPN  +PL    +P++ +DVWEHAYYL++QNRRPDYI  F + +V W +  KR + AK
Sbjct:  142 LEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQEAK 203          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   12 VVSTPNAVNPLVWDY------SPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            VVST N  NPL+ +       +P+L +DVWEHAYYL++QNRRPDY++ F + +V+W+ VSKR  +AK
Sbjct:  146 VVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKRYAAAK 211          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L + STPN  +PL    +P+L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V++    AK
Sbjct:  141 LEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVARLYSEAK 202          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            L +V T NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++WE V   L
Sbjct:  149 LQIVKTANAGTPIANGMQPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWEFVENNL 207          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 3
Query:    3 SLLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 164
            +L V  TPNA NPL      LLT+DVWEHAYY+DF+N RP +I  ++D LV+W+
Sbjct:  138 TLKVTKTPNAENPLAHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWD 191          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYI+ F + +V+WE V++   + K
Sbjct:  138 LEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYINAFWN-VVNWEKVNELYNATK 199          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYI+ F + +V+WE V++   + K
Sbjct:  138 LEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYINAFWN-VVNWEKVNELYNATK 199          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 191
            L +VSTPN  NP+    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+W  V +  E+A
Sbjct:  139 LEIVSTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYIDAFWN-VVNWNKVDELYEAA 199          
The following BLAST results are available for this feature:
BLAST of CX299661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SODM_STAHJ1.595e-1252.38Superoxide dismutase [Mn/Fe] OS=Staphylococcus hae... [more]
SODM1_BACCR1.595e-1252.38Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM1_BACAN1.595e-1252.38Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_DEIRA2.083e-1252.24Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_BACSU2.083e-1252.38Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODF_RICBR3.554e-1247.46Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_ANASP3.554e-1255.56Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODM_STAES4.641e-1249.21Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ4.641e-1249.21Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STACA4.641e-1251.61Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]

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Properties
Property NameValue
Genbank descriptionC06024G12SK RindPdig24 Citrus clementina cDNA clone C06024G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299661 ID=CX299661; Name=CX299661; organism=Citrus clementina; type=EST; length=548bp
AGAGCCTTTTAGTGGTGTCGACTCCCAATGCTGTCAATCCTCTTGTCTGG
GATTACTCGCCGCTCCTTACTATTGATGTATGGGAGCATGCTTATTACCT
CGACTTTCAGAATCGACGACCTGATTACATATCAGTTTTCATGGATAAGC
TTGTATCATGGGAATCAGTAAGTAAAAGACTGGAATCAGCCAAAGCTCCA
GCTACCTAGATTGAAATGGAAGAATGATGAAGGAAGATGAAGAGAAAATA
AATAATAAGCTGCTTGGTAGCAACACTATGTTGTGCTGATGATACTTTGC
TGAACAATAAAAATAGTTAGGTCTTTGGTACACACTACTTTGTGATTAGT
AATCTCTATTGTCAAAGTGTTGGTTTCTTCTTATAACAATCAGGGTATAA
TAAAACCTATCAAAGTATATGTATGAGTTACTTTTTGAAAATAGTTTTTG
GATGACTAATATTACTTTCAGGCCTGTTTAGTATGTTGAATACTATTATC
TTGGACTATAAATTATATTTTTAATAATCAATCAATAATTGTATTTTT
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