CX299661

Overview
NameCX299661
Unique NameCX299661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:679..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 3 
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +VST N  +PL    +P+L +DVWEHAYYL FQNRRP+YI  F + +++W+  +KR ++AK
Sbjct:  141 LEIVSTANQDSPLSDGKTPVLGLDVWEHAYYLKFQNRRPEYIETFWN-VINWDEANKRFDAAK 202
The following BLAST results are available for this feature:
BLAST of CX299661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SODM1_STAAW4.641e-1250.79Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS4.641e-1250.79Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR4.641e-1250.79Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN4.641e-1250.79Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM4.641e-1250.79Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAC4.641e-1250.79Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAB4.641e-1250.79Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA84.641e-1250.79Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]
SODM1_STAA34.641e-1250.79Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM_LISMO6.062e-1250.79Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]

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Properties
Property NameValue
Genbank descriptionC06024G12SK RindPdig24 Citrus clementina cDNA clone C06024G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299661 ID=CX299661; Name=CX299661; organism=Citrus clementina; type=EST; length=548bp
AGAGCCTTTTAGTGGTGTCGACTCCCAATGCTGTCAATCCTCTTGTCTGG
GATTACTCGCCGCTCCTTACTATTGATGTATGGGAGCATGCTTATTACCT
CGACTTTCAGAATCGACGACCTGATTACATATCAGTTTTCATGGATAAGC
TTGTATCATGGGAATCAGTAAGTAAAAGACTGGAATCAGCCAAAGCTCCA
GCTACCTAGATTGAAATGGAAGAATGATGAAGGAAGATGAAGAGAAAATA
AATAATAAGCTGCTTGGTAGCAACACTATGTTGTGCTGATGATACTTTGC
TGAACAATAAAAATAGTTAGGTCTTTGGTACACACTACTTTGTGATTAGT
AATCTCTATTGTCAAAGTGTTGGTTTCTTCTTATAACAATCAGGGTATAA
TAAAACCTATCAAAGTATATGTATGAGTTACTTTTTGAAAATAGTTTTTG
GATGACTAATATTACTTTCAGGCCTGTTTAGTATGTTGAATACTATTATC
TTGGACTATAAATTATATTTTTAATAATCAATCAATAATTGTATTTTT
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