CX299661

Overview
NameCX299661
Unique NameCX299661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:679..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 176
            L V+S PN  +PL+  Y P+L IDVWEHAYYL +QNRR +Y+  F+ K ++WE VSK
Sbjct:  141 LKVISMPNQDSPLMNSYKPILGIDVWEHAYYLKYQNRRIEYVDAFL-KALNWEEVSK 196          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            L+V ST N  +PL    +P+L +DVWEHAYYL +QNRRP+YI  F + +V+W+ VS+R + A A
Sbjct:  140 LVVESTGNQDSPLSTGNTPILGLDVWEHAYYLKYQNRRPEYIGAFFN-VVNWDEVSRRYQEALA 202          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L +VST N  +PL    +P+L +DVWEHAYYL FQNRRP+YI  F + +++W+  +KR ++AK
Sbjct:  141 LEIVSTANQDSPLSEGKTPVLGLDVWEHAYYLKFQNRRPEYIDTFWN-VINWDERNKRFDAAK 202          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            L ++ T NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:  149 LQIIKTANAGTPIAHGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM2_PLEBO (Superoxide dismutase [Mn] 2 OS=Plectonema boryanum GN=sodA2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 27/62 (43.55%), Postives = 49/62 (79.03%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 191
            L ++STPN  +PL+  ++P++  DVWEHAYYL +QNRRP+Y++ + + +++WE +++R ++A
Sbjct:  142 LQILSTPNQDSPLIEGHTPIMGNDVWEHAYYLKYQNRRPEYLNAWWN-VLNWEEINRRFDAA 202          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            L ++ T NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:  149 LQIIKTANAGTPIANGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.008e-11
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            ++V ST N  +PL    +P+L +DVWEHAYYL +QNRRPDYI  F + +V+W+ V +R  +A A
Sbjct:  141 VVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPDYIGAFYN-VVNWDEVERRYHAAIA 203          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.008e-11
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            ++V ST N  +PL    +P+L +DVWEHAYYL +QNRRPDYI  F + +V+W+ V +R  +A A
Sbjct:  141 VVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPDYIGAFYN-VVNWDEVERRYHAAIA 203          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.008e-11
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVW------DYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            L VVST N  NPL+       +  PLL +DVWEHAYYL FQNRRPDYI  F + +V+W+ V++R E   A
Sbjct:  141 LAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDFVAERFEQKTA 209          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3
Query:    3 SLLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            SLLV S+ N  +PL+   +P+L +DVWEHAYYL +QNRRP+YI  F + ++ W  V++R   A A
Sbjct:  140 SLLVESSGNQDSPLMNGNTPILGLDVWEHAYYLKYQNRRPEYIGAFYN-VIDWREVARRYAQALA 203          
The following BLAST results are available for this feature:
BLAST of CX299661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SODM_BORBU6.062e-1256.14Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODF_METJ7.917e-1251.56Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=... [more]
SODM_LISIV1.034e-1150.79Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODF_RICCN1.034e-1144.07Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODM2_PLEBO1.350e-1143.55Superoxide dismutase [Mn] 2 OS=Plectonema boryanum... [more]
SODF_RICFE1.764e-1144.07Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODM_XANCP3.008e-1150.00Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_XANC83.008e-1150.00Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_HAEIN3.008e-1152.86Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_PSEAE5.131e-1149.23Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionC06024G12SK RindPdig24 Citrus clementina cDNA clone C06024G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299661 ID=CX299661; Name=CX299661; organism=Citrus clementina; type=EST; length=548bp
AGAGCCTTTTAGTGGTGTCGACTCCCAATGCTGTCAATCCTCTTGTCTGG
GATTACTCGCCGCTCCTTACTATTGATGTATGGGAGCATGCTTATTACCT
CGACTTTCAGAATCGACGACCTGATTACATATCAGTTTTCATGGATAAGC
TTGTATCATGGGAATCAGTAAGTAAAAGACTGGAATCAGCCAAAGCTCCA
GCTACCTAGATTGAAATGGAAGAATGATGAAGGAAGATGAAGAGAAAATA
AATAATAAGCTGCTTGGTAGCAACACTATGTTGTGCTGATGATACTTTGC
TGAACAATAAAAATAGTTAGGTCTTTGGTACACACTACTTTGTGATTAGT
AATCTCTATTGTCAAAGTGTTGGTTTCTTCTTATAACAATCAGGGTATAA
TAAAACCTATCAAAGTATATGTATGAGTTACTTTTTGAAAATAGTTTTTG
GATGACTAATATTACTTTCAGGCCTGTTTAGTATGTTGAATACTATTATC
TTGGACTATAAATTATATTTTTAATAATCAATCAATAATTGTATTTTT
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