CX299661

Overview
NameCX299661
Unique NameCX299661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:679..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 3 
Query:    3 SLLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 185
            +L +++T NA  P+    + LLT DVWEHAYY+D++NRRPDYI  F   LV+W+  S  L+
Sbjct:  133 ALKIINTSNAGTPMTEGLNALLTCDVWEHAYYIDYRNRRPDYIEAFW-SLVNWDFASSNLK 192
[Close]
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 3 
Query:    3 SLLVVSTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            SL + STPN  NPL+          PLL +DVWEHAYYL +QNRRP+YI+ + + +V+WE V++  ++A+A
Sbjct:  144 SLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAWWN-VVNWEQVAENYKAAQA 213
The following BLAST results are available for this feature:
BLAST of CX299661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SODF_LEGPH5.131e-1149.18Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODM_CHLRE8.753e-1147.89Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]

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Properties
Property NameValue
Genbank descriptionC06024G12SK RindPdig24 Citrus clementina cDNA clone C06024G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299661 ID=CX299661; Name=CX299661; organism=Citrus clementina; type=EST; length=548bp
AGAGCCTTTTAGTGGTGTCGACTCCCAATGCTGTCAATCCTCTTGTCTGG
GATTACTCGCCGCTCCTTACTATTGATGTATGGGAGCATGCTTATTACCT
CGACTTTCAGAATCGACGACCTGATTACATATCAGTTTTCATGGATAAGC
TTGTATCATGGGAATCAGTAAGTAAAAGACTGGAATCAGCCAAAGCTCCA
GCTACCTAGATTGAAATGGAAGAATGATGAAGGAAGATGAAGAGAAAATA
AATAATAAGCTGCTTGGTAGCAACACTATGTTGTGCTGATGATACTTTGC
TGAACAATAAAAATAGTTAGGTCTTTGGTACACACTACTTTGTGATTAGT
AATCTCTATTGTCAAAGTGTTGGTTTCTTCTTATAACAATCAGGGTATAA
TAAAACCTATCAAAGTATATGTATGAGTTACTTTTTGAAAATAGTTTTTG
GATGACTAATATTACTTTCAGGCCTGTTTAGTATGTTGAATACTATTATC
TTGGACTATAAATTATATTTTTAATAATCAATCAATAATTGTATTTTT
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