CX299667

Overview
NameCX299667
Unique NameCX299667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11394 contig Ccv1_Contig11394:745..1464. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMTB_ECO57 (Ammonia channel OS=Escherichia coli O157:H7 GN=amtB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-26
Identity = 75/233 (32.19%), Postives = 113/233 (48.50%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSG--SIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWN 699
            +WGGG L   G +D++GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+   A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +    A+++G+++G   +  VTM+        L +VDD   VF  H V           FA   L  +   E       G   G Q L Q+      I W+
Sbjct:  169 VWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTML------KRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAE-------GVTMGHQLLVQLESIAITIVWS 388          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT_AQUAE (Ammonia channel OS=Aquifex aeolicus GN=amt PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.499e-26
Identity = 76/235 (32.34%), Postives = 115/235 (48.94%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVST 711
            +WGGGFL   G +D++GG V+H+++GIAGL  A  +G R  +      PNNV               GFN G+   A+ +++ A++NT VA +T+ L W   + +  GKP+V+G   G++ GLV ITP AG V    +I +G ++    +  + ++  K       DD L VF  H V           FA+P +        T G  YG     Q L QI G +  I ++ + T
Sbjct:  169 VWGGGFLANDGALDFAGGTVVHINAGIAGLVGALILGRRKDTS---LIPNNVPLVALGAGILWFGWFGFNAGSALGANESAAWAMINTTVATSTAALAWMFTEWLHVGKPTVVGISSGIVAGLVAITPAAGFVNLIGSIFIGAIASVCAYFMVALVKPKFG----YDDALDVFGIHGVRGIVGAVLTGVFADPNV------GGTPGLLYGNP--KQVLIQIEGVIATILYSAILT 388          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: Y661_METTH (Putative ammonium transporter MTH_661 OS=Methanobacterium thermoautotrophicum GN=MTH_661 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.558e-26
Identity = 75/236 (31.78%), Postives = 116/236 (49.15%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTH 714
            +WGGGFL   GV D++GG V+H++SGIA L  A   GPR     ++  P+++               GFN G+  +A   ++ A++ TN +AA  ++ W  +D +  GKP+++GA+ G + GL  ITP AG V   A+IV G+++  I ++ +  L          DD L VF  H V           FA P L     P  T G    G   +  + Q++G + V  +  V T+
Sbjct:  148 VWGGGFLQNLGVHDFAGGIVVHITSGIAALALALVTGPRYD---QKLMPHHLGYSVIGTGLLWFGWFGFNAGSALSAGSLAANAMIVTNTSAAAGMIGWILMDRLKTGKPTLLGALSGAVAGLASITPAAGFVDIGASIVTGLVAAVICYLAVSWLKPAAG----YDDALDVFGIHGVSGIIGTLGVGLFAVPAL----NPSLTSGGLLTGSTSL-LVSQLIGVVTVTVYTFVVTY 371          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: NRGA_BACSU (Ammonium transporter nrgA OS=Bacillus subtilis GN=nrgA PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 64/178 (35.96%), Postives = 96/178 (53.93%), Query Frame = 1
Query:    7 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAV 540
            +WGGG++ Q G +D++GG V+H+SSG+AGL  A  +G R   D     P+N+               GFN G+       +  A +NTN AAA  +  W  ++ I   KP+++GAV G + GLV ITP AG V  +A+I++GI+ G++ +  +  L KK       DD L  F  H +
Sbjct:  144 VWGGGWIGQLGALDFAGGNVVHISSGVAGLVLAIVLGKR--KDGTASSPHNLIYTFLGGALIWFGWFGFNVGSALTLDGVAMYAFINTNTAAAAGIAGWILVEWIINKKPTMLGAVSGAIAGLVAITPAAGFVTPFASIIIGIIGGAVCFWGVFSLKKKFG----YDDALDAFGLHGI 315          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT1_DICDI (Ammonium transporter 1 OS=Dictyostelium discoideum GN=amtA PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 74/238 (31.09%), Postives = 117/238 (49.16%), Query Frame = 1
Query:    7 LWGGGFLYQW-GVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKE--RFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPTRGAFYGGKG--GVQFLKQIVGALFVIAWNLV 705
            +WGGG+L+++ GV+D++GG VIH S+G++ L  A +VG R   +K    FPP+N+               GFN G+  AA   ++ A+ +T +  + S +VW  L     GKP+ +  + G++ GL  ITP +G + S  +I +GI  G   + ++++L  K      +DD L V   H +            AE  +     P    GAFYG     G Q L  +  A++  AW  V
Sbjct:  180 IWGGGWLHKYFGVLDFAGGIVIHTSAGVSALVIALYVGRRKDFEKYGGEFPPSNLPLATIGAALLWMGWFGFNAGSALAAGNIATSAVASTQIGGSFSAIVWIILSAAK-GKPNTVSVINGVIAGLAGITPASGYINSQYSIGLGICLGLASYYSVVLLKHKL----HIDDALDVSSVHGLTGIIGSLAIGFCAELSV----NPNGANGAFYGNPKLIGTQLLGVVSVAVWAAAWTWV 408          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT1_SCHPO (Ammonium transporter 1 OS=Schizosaccharomyces pombe GN=amt1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 60/174 (34.48%), Postives = 94/174 (54.02%), Query Frame = 1
Query:   19 GFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAV 540
            G+L + G  D++GG  +H+SSG+A L  +  +G R      ++ P+NV               GFNGG+  AA++   +A++ T++AA+   +VW  +D       SV+G  +G + GLV ITPG+G V  WAA+V+G L G++       L K    + +VDD L +F  H V
Sbjct:  177 GWLNKLGSYDFAGGSPVHISSGMAALAYSIVIGKRCDHGTTKYRPHNVPHVVLGTVFLWFGWFGFNGGSSAAANMRGVMAVVVTHLAASVGGIVWCVIDFAKNRHWSVVGFCEGAVAGLVAITPGSGFVPPWAAVVIGAL-GAVFCYAATYLKK----IIRVDDALDIFAEHGV 345          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT2_SCHPO (Ammonium transporter 2 OS=Schizosaccharomyces pombe GN=amt2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 61/181 (33.70%), Postives = 95/181 (52.49%), Query Frame = 1
Query:    7 LWG-GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIF-FGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSG-SIPWVTMMILHKKCSLLQQVDDTLAVFHTHAV 540
            +W   G+ +++GV D++GG  + V SG A L     +G R K  +E+F P++V               GFNGG+ Y +++ +++AI NTN+A A + LVW   D IF   K S IG   G++ GLV  TP AG V   A++ +G ++G    W   +  H       ++DD + +F  H V
Sbjct:  187 IWNPNGWAFKFGVYDFAGGGPVEVGSGFAALAYTVCLGRRSKFVEEQFRPHSVLNVVLGTSLLWFGWLGFNGGSAYGSNLRAAMAITNTNLAGAVAGLVWVIYDYIFRTRKWSTIGFCSGVVAGLVAATPCAGFVSPHASLAIGAITGLCCNWAIKLKSH------MRIDDAMDIFAIHGV 361          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT_MYCTU (Probable ammonia channel OS=Mycobacterium tuberculosis GN=amt PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.711e-18
Identity = 62/234 (26.50%), Postives = 106/234 (45.30%), Query Frame = 1
Query:   13 GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLT-LPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVST 711
            GG    +   ID++GG  +H+++G+A L  A  +G R       F P+N+               GFN G+   A+  +    + T +A A ++L W   + +  GK + +GA  G++ GLV ITP    V    A+ +G+ +G +  + + +  K        DD+L V   H V            A P+   +  +   ++G FYGG G  Q  +Q +GA  V+ ++ + T
Sbjct:  180 GGWIANKLHAIDFAGGTAVHINAGVAALMLAIVLGKRRGWPATLFRPHNLPFVMLGAALLWFGWYGFNAGSATTANGVAGATFVTTTIATAAAMLGWLLTERVRDGKATTLGAASGIVAGLVAITPSCSSVNVLGALAVGVSAGVLCALAVGLKFK-----LGFDDSLDVVGVHLVGGLVGTLLVGLLAAPEAPAINGVAGVSKGLFYGG-GFAQLERQALGACSVLVYSGIIT 407          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: AMT_MYCBO (Probable ammonia channel OS=Mycobacterium bovis GN=amt PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.711e-18
Identity = 62/234 (26.50%), Postives = 106/234 (45.30%), Query Frame = 1
Query:   13 GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLT-LPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVST 711
            GG    +   ID++GG  +H+++G+A L  A  +G R       F P+N+               GFN G+   A+  +    + T +A A ++L W   + +  GK + +GA  G++ GLV ITP    V    A+ +G+ +G +  + + +  K        DD+L V   H V            A P+   +  +   ++G FYGG G  Q  +Q +GA  V+ ++ + T
Sbjct:  180 GGWIANKLHAIDFAGGTAVHINAGVAALMLAIVLGKRRGWPATLFRPHNLPFVMLGAALLWFGWYGFNAGSATTANGVAGATFVTTTIATAAAMLGWLLTERVRDGKATTLGAASGIVAGLVAITPSCSSVNVLGALAVGVSAGVLCALAVGLKFK-----LGFDDSLDVVGVHLVGGLVGTLLVGLLAAPEAPAINGVAGVSKGLFYGG-GFAQLERQALGACSVLVYSGIIT 407          
BLAST of CX299667 vs. ExPASy Swiss-Prot
Match: MEP3_YEAST (Ammonium transporter MEP3 OS=Saccharomyces cerevisiae GN=MEP3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.742e-18
Identity = 52/179 (29.05%), Postives = 89/179 (49.72%), Query Frame = 1
Query:    7 LWG-GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAV 540
            +W  GG+ YQWGV+D++GG  I + S +AG   +Y++G R ++    F P+NV                FN  +  + ++ S  A +NT ++A T  + W  LD     K S +G   G++ GLV  TP +G +  + +++ GI++G      +     K     +VDD+L +   H +
Sbjct:  158 IWAPGGWAYQWGVLDWAGGGNIEILSAVAGFVYSYFLGRRKENLLINFRPHNVSMVTLGTSILWFGWLLFNAASSLSPNMRSVYAFMNTCLSATTGGMTWCLLDYRSEKKWSTVGLCSGIICGLVAATPSSGCITLYGSLIQGIIAG-----VVCNFATKIKYYLKVDDSLDLLAEHGI 331          
The following BLAST results are available for this feature:
BLAST of CX299667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
AMTB_ECO571.148e-2632.19Ammonia channel OS=Escherichia coli O157:H7 GN=amt... [more]
AMT_AQUAE1.499e-2632.34Ammonia channel OS=Aquifex aeolicus GN=amt PE=1 SV... [more]
Y661_METTH2.558e-2631.78Putative ammonium transporter MTH_661 OS=Methanoba... [more]
NRGA_BACSU2.828e-2535.96Ammonium transporter nrgA OS=Bacillus subtilis GN=... [more]
AMT1_DICDI6.300e-2531.09Ammonium transporter 1 OS=Dictyostelium discoideum... [more]
AMT1_SCHPO2.477e-2134.48Ammonium transporter 1 OS=Schizosaccharomyces pomb... [more]
AMT2_SCHPO3.236e-2133.70Ammonium transporter 2 OS=Schizosaccharomyces pomb... [more]
AMT_MYCTU5.711e-1826.50Probable ammonia channel OS=Mycobacterium tubercul... [more]
AMT_MYCBO5.711e-1826.50Probable ammonia channel OS=Mycobacterium bovis GN... [more]
MEP3_YEAST9.742e-1829.05Ammonium transporter MEP3 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC06024H06SK RindPdig24 Citrus clementina cDNA clone C06024H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299667 ID=CX299667; Name=CX299667; organism=Citrus clementina; type=EST; length=720bp
GAGGGTCTTTGGGGTGGTGGCTTCCTTTATCAGTGGGGTGTCATTGATTA
TTCTGGTGGCTATGTTATTCACGTCTCCTCAGGAATTGCCGGTCTCACTG
CCGCCTATTGGGTTGGACCCAGGCTAAAGAGTGACAAAGAGAGGTTTCCT
CCGAATAATGTGCTGCTCATGCTTGCGGGAGCCGGGCTGCTGTGGATGGG
ATGGTCGGGTTTCAACGGTGGGGCTCCTTATGCTGCTCATATCGCCTCTT
CGATCGCTATTCTAAACACAAATGTAGCGGCGGCCACGAGCCTTCTTGTT
TGGACATGTCTTGATGTTATCTTCTTTGGGAAGCCTTCAGTTATCGGAGC
TGTTCAGGGCATGATGACTGGCCTTGTTTGCATCACCCCAGGAGCTGGGC
TGGTACAATCATGGGCGGCTATTGTAATGGGCATTCTTTCTGGTAGCATT
CCGTGGGTAACTATGATGATTCTTCACAAGAAGTGTAGTCTTCTTCAACA
GGTGGATGACACACTGGCTGTGTTTCACACGCACGCGGTGACTGGGCTGT
TGGGCGGGCTACTGACCGGGCTATTTGCGGAGCCACAACTGTGCAAGCTC
ACACTACCAGAGCCCACAAGAGGAGCATTCTACGGGGGGAAAGGCGGGGT
GCAATTTCTGAAGCAGATTGTTGGGGCTCTGTTTGTTATCGCCTGGAATT
TAGTTTCCACACATCATTCT
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