CX299687

Overview
NameCX299687
Unique NameCX299687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 7.697e-65
Identity = 117/160 (73.12%), Postives = 135/160 (84.38%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFK-ASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVS+HLFAV QGLLKVL G+DTNFTVT K ASDE  +F +LY+FKW           ++N+VGVVAGVS AIN+GY SWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVV+W+ILLA IFSL+WVR+DPF  + TGP ++QCG++C
Sbjct:  890 RNEQFWVIGGVSAHLFAVFQGLLKVLFGVDTNFTVTSKGASDEADEFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLKQCGVDC 1049          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 2.925e-64
Identity = 114/159 (71.70%), Postives = 134/159 (84.28%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVSSHLFAV QGLLKV+AGIDT+FTVT K  D++ +F+ELY FKW           ++N +GVVAGVS AIN+GY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV+VW+ILLA IFSLLWVR+DPF  +  GP +E+CG++C
Sbjct:  934 RNEQFWVIGGVSSHLFAVFQGLLKVIAGIDTSFTVTSKGGDDE-EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKNDGPLLEECGLDC 1091          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 2.925e-64
Identity = 114/159 (71.70%), Postives = 134/159 (84.28%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVSSHLFAV QGLLKV+AGIDT+FTVT K  D++ +F+ELY FKW           ++N +GVVAGVS AIN+GY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV+VW+ILLA IFSLLWVR+DPF  +  GP +E+CG++C
Sbjct:  934 RNEQFWVIGGVSSHLFAVFQGLLKVIAGIDTSFTVTSKGGDDE-EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKNDGPLLEECGLDC 1091          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 6.516e-64
Identity = 113/159 (71.07%), Postives = 134/159 (84.28%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVSSHLFA+ QGLLKV+AGIDT+FTVT K  D++ +F+ELY FKW           ++N +GVVAGVS AIN+GY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV+VW+ILLA IFSLLWVR+DPF  +  GP +E+CG++C
Sbjct:  935 RNEQFWVIGGVSSHLFALFQGLLKVIAGIDTSFTVTSKGGDDE-EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKNDGPLLEECGLDC 1092          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 6.516e-64
Identity = 111/143 (77.62%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPF 429
            RNEQFWVIGG S+HLFAV QGLLKVLAGIDTNFTVT KA+DEDGDF ELY+FKW           ++NL+G+VAGVSYA+NSGYQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VW++LLA IFSLLWVR++PF
Sbjct:  922 RNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKATDEDGDFAELYIFKWTALLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPF 1064          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 7.205e-63
Identity = 111/145 (76.55%), Postives = 123/145 (84.83%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTT 435
            RNEQFWVIGG S+HLFAV QGLLKV AGIDTNFTVT KASDEDGDF ELY+FKW           ++NLVG+VAGVSYAINSGYQSWGPL GKL FAFWV+ HLYPFLKGL+GRQNRTPTIV+VW+ LLA IFSLLWVR++PF +
Sbjct:  909 RNEQFWVIGGTSAHLFAVFQGLLKVFAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVS 1053          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 9.410e-63
Identity = 112/160 (70.00%), Postives = 132/160 (82.50%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKAS-DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVS+HLFAV QGLLKVL G+DTNFTVT KA+ DE   F ELY+FKW           +IN+VG+VAGVS A+N+GY SWGPLFGKLFF+FWVI+HLYPFLKGLMGRQNRTPTIVV+W+ILLA IFSL+WVR+DPF  +  GP ++ CG++C
Sbjct:  904 RNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTSKAAADETDAFGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFIPKPKGPVLKPCGVSC 1063          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 5.709e-60
Identity = 108/159 (67.92%), Postives = 132/159 (83.02%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVSSHLFA+ QGLLKVLAG+ TNFTVT KA+D DG+F+ELY+FKW           +IN+VGV+ GVS AIN+GY SWGPLFG+LFFA WVIVHLYPFLKGL+G+Q+R PTI++VW+ILLA I +LLWVRV+PF ++  GP +E CG++C
Sbjct:  930 RNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAAD-DGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVNPFVSK-DGPVLEICGLDC 1086          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 3.700e-59
Identity = 105/159 (66.04%), Postives = 132/159 (83.02%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVS+HLFA+ QGLLKVLAG+DTNFTVT KA+D DG+F++LY+FKW           +IN++GV+ GVS AI++GY SWGPLFG+LFFA WVI+HLYPFLKGL+G+Q+R PTI+VVW+ILLA I +LLWVRV+PF  +  GP +E CG++C
Sbjct:  927 RNEQFWVIGGVSAHLFALFQGLLKVLAGVDTNFTVTSKAAD-DGEFSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1083          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 6.312e-59
Identity = 104/159 (65.41%), Postives = 133/159 (83.65%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVS+HLFA+ QGLLKVLAG++TNFTVT KA+D DG+F+ELY+FKW           +IN++GV+ G+S AI++GY SWGPLFG+LFFAFWVI+HLYPFLKGL+G+Q+R PTI++VW+ILLA I +LLWVRV+PF  +  GP +E CG++C
Sbjct:  912 RNEQFWVIGGVSAHLFALFQGLLKVLAGVETNFTVTSKAAD-DGEFSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1068          
The following BLAST results are available for this feature:
BLAST of CX299687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CESA4_ARATH7.697e-6573.13Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA5_ORYSJ2.925e-6471.70Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI2.925e-6471.70Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ORYSJ6.516e-6471.07Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA1_ARATH6.516e-6477.62Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESAA_ARATH7.205e-6376.55Probable cellulose synthase A catalytic subunit 10... [more]
CESA7_ORYSJ9.410e-6370.00Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA9_ARATH5.709e-6067.92Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA6_ARATH3.700e-5966.04Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA5_ARATH6.312e-5965.41Cellulose synthase A catalytic subunit 5 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionC07001B06SK NTLeaf1 Citrus clementina cDNA clone C07001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299687 ID=CX299687; Name=CX299687; organism=Citrus clementina; type=EST; length=479bp
AGAAACGAACAGTTTTGGGTTATTGGCGGCGTTTCATCCCATCTATTCGC
TGTTTTGCAAGGGCTTCTCAAAGTACTTGCTGGTATTGACACCAACTTCA
CTGTCACCTTCAAGGCATCAGATGAAGACGGCGATTTTACTGAGCTCTAT
ATGTTCAAATGGACAACACTACTTATTCCACCAACAACTCTTCTTGTCAT
AAACTTGGTTGGTGTAGTTGCGGGTGTCTCGTATGCCATCAACAGCGGGT
ATCAATCATGGGGTCCTCTCTTTGGTAAGCTATTCTTTGCCTTTTGGGTG
ATCGTCCATCTTTACCCCTTCCTCAAAGGTTTGATGGGACGCCAAAACCG
GACACCCACCATTGTTGTCGTGTGGACAATTCTCCTTGCCTGCATATTCT
CTTTACTATGGGTGCGAGTTGATCCCTTTACCACCAGAGTCACTGGTCCT
GATGTCGAGCAATGTGGAATCAACTGCTG
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