CX299687

Overview
NameCX299687
Unique NameCX299687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.836e-58
Identity = 105/159 (66.04%), Postives = 130/159 (81.76%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGG SSHLFA+ QGLLKVLAG++TNFTVT KA+D DG F+ELY+FKW           +IN++GV+ GVS AI++GY SWGPLFG+LFFA WVIVHLYPFLKG++G+Q++ PTI+VVW+ILLA I +LLWVRV+PF  +  GP +E CG+NC
Sbjct:  926 RNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAAD-DGAFSELYIFKWTTLLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPVLEICGLNC 1082          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 5.343e-58
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPF 429
            RNEQFWVIGGVS+HLFAV QG+LK++AG+DTNFTVT KA+D D +F ELY+FKW           V+NLVGVVAG S A+NSGY+SWGPLFGK+FFA WVI+HLYPFLKGLMGRQNRTPTIVV+W++LLA +FSLLWV++DPF
Sbjct:  831 RNEQFWVIGGVSAHLFAVFQGILKMIAGLDTNFTVTAKATD-DTEFGELYVFKWTTVLIPPTSILVLNLVGVVAGFSDALNSGYESWGPLFGKVFFAMWVIMHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWVKIDPF 972          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 5.343e-58
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPF 429
            RNEQFWVIGGVS+HLFAV QG+LK++AG+DTNFTVT KA+D D +F ELY+FKW           V+NLVGVVAG S A+NSGY+SWGPLFGK+FFA WVI+HLYPFLKGLMGRQNRTPTIVV+W++LLA +FSLLWV++DPF
Sbjct:  831 RNEQFWVIGGVSAHLFAVFQGILKMIAGLDTNFTVTAKATD-DTEFGELYVFKWTTVLIPPTSILVLNLVGVVAGFSDALNSGYESWGPLFGKVFFAMWVIMHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWVKIDPF 972          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 4.523e-57
Identity = 104/159 (65.41%), Postives = 126/159 (79.25%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQCGINC 477
            RNEQFWVIGGVS+HLFAV QG LK+LAG+DTNFTVT K +D D +F ELY+ KW           +INLVGVVAG S A+N GY++WGPLFGK+FFAFWVI+HLYPFLKGLMGRQNRTPTIV++W+ILLA +FSL+WVR++PF ++    D     +NC
Sbjct:  826 RNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKTAD-DLEFGELYIVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVSKT---DTTSLSLNC 980          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.253e-39
Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFW+IGG S+HL AVLQGLLKV+AGI+ +FT+T K+  ++ D  F +LY+ KW           ++NL+ +  G S  I S    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VW+ LLA   SLLWV ++P
Sbjct: 1013 RNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDEADDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.253e-39
Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFW+IGG S+HL AVLQGLLKV+AGI+ +FT+T K+  ++ D  F +LY+ KW           ++NL+ +  G S  I S    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VW+ LLA   SLLWV ++P
Sbjct: 1013 RNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDEADDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.555e-39
Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKAS--DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFW+IGG S+HL AVLQGLLKV+AG++ +FT+T K+   D D +F +LYM KW           ++NL+ +  G S  I S    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VW+ L+A   SLLWV ++P
Sbjct:  988 RNEQFWLIGGTSAHLAAVLQGLLKVVAGVEISFTLTSKSGGDDIDDEFADLYMVKWTSLMIPPITIIMVNLIAIAVGFSRTIYSVVPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.255e-39
Identity = 78/144 (54.17%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFK--ASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFW+IGG S+HL AVLQGLLKV+AGI+ +FT+T K    D D +F ELY  KW           +INLV +  G S  I S    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VW+ L+A   SLLW+ + P
Sbjct:  968 RNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQLGDDVDDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP 1111          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 7.255e-39
Identity = 78/144 (54.17%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFK--ASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFW+IGG S+HL AVLQGLLKV+AGI+ +FT+T K    D D +F ELY  KW           +INLV +  G S  I S    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VW+ L+A   SLLW+ + P
Sbjct:  968 RNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQLGDDVDDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP 1111          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 9.475e-39
Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFW+IGG S+HL AV+QGLLKV+AGI+ +FT+T K+  ED D  F +LY+ KW           ++NL+ +  G S  I S    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VW+ L+A   SLLWV ++P
Sbjct:  988 RNEQFWLIGGTSAHLAAVIQGLLKVVAGIEISFTLTSKSGGEDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131          
The following BLAST results are available for this feature:
BLAST of CX299687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CESA2_ARATH1.836e-5866.04Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA4_ORYSJ5.343e-5872.73Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI5.343e-5872.73Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA8_ARATH4.523e-5765.41Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CSLD2_ORYSJ4.253e-3952.78Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI4.253e-3952.78Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ARATH5.555e-3952.78Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD1_ORYSJ7.255e-3954.17Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI7.255e-3954.17Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD3_ARATH9.475e-3952.78Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC07001B06SK NTLeaf1 Citrus clementina cDNA clone C07001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299687 ID=CX299687; Name=CX299687; organism=Citrus clementina; type=EST; length=479bp
AGAAACGAACAGTTTTGGGTTATTGGCGGCGTTTCATCCCATCTATTCGC
TGTTTTGCAAGGGCTTCTCAAAGTACTTGCTGGTATTGACACCAACTTCA
CTGTCACCTTCAAGGCATCAGATGAAGACGGCGATTTTACTGAGCTCTAT
ATGTTCAAATGGACAACACTACTTATTCCACCAACAACTCTTCTTGTCAT
AAACTTGGTTGGTGTAGTTGCGGGTGTCTCGTATGCCATCAACAGCGGGT
ATCAATCATGGGGTCCTCTCTTTGGTAAGCTATTCTTTGCCTTTTGGGTG
ATCGTCCATCTTTACCCCTTCCTCAAAGGTTTGATGGGACGCCAAAACCG
GACACCCACCATTGTTGTCGTGTGGACAATTCTCCTTGCCTGCATATTCT
CTTTACTATGGGTGCGAGTTGATCCCTTTACCACCAGAGTCACTGGTCCT
GATGTCGAGCAATGTGGAATCAACTGCTG
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