CX299687
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 9.475e-39 Identity = 75/144 (52.08%), Postives = 98/144 (68.06%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426 RNEQFW+IGG S+HL AV+QGLLKV+AGI+ +FT+T KAS ED D F +LY+ KW ++NLV +V G S I S WG L G +FF+ WV+ H+YPF KGLMGR+ + PTIV VW+ L++ SLLW+ + P Sbjct: 881 RNEQFWLIGGTSAHLAAVVQGLLKVIAGIEISFTLTSKASGEDEDDIFADLYIVKWTGLFIMPLTIIIVNLVAIVIGASRTIYSVIPQWGKLMGGIFFSLWVLTHMYPFAKGLMGRRGKVPTIVYVWSGLVSITVSLLWITISP 1024
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38 Identity = 74/145 (51.03%), Postives = 100/145 (68.97%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKAS---DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426 RNEQFWVIGG S+H AVLQGLLKV+AG+D +FT+T K+S D D +F +LY+ KW ++N++ + G++ + S + W L G +FF+FWV+ HLYPF KGLMGR+ R PTIV VW+ LL+ I SLLWV ++P Sbjct: 1024 RNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSSAPEDGDDEFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVLCHLYPFAKGLMGRRGRVPTIVFVWSGLLSIIVSLLWVYINP 1168
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 1.787e-37 Identity = 76/144 (52.78%), Postives = 96/144 (66.67%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426 RNEQFWVIGG S+HL AVLQGLLKV+AGI+ +FT+T KA+ ED D F ELY+ KW IN++ +V GVS + + + L G FF+FWV+ H YPF KGLMGR+ RTPTIV VW L++ SLLW+ + P Sbjct: 857 RNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP 1000
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 1.787e-37 Identity = 76/144 (52.78%), Postives = 96/144 (66.67%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426 RNEQFWVIGG S+HL AVLQGLLKV+AGI+ +FT+T KA+ ED D F ELY+ KW IN++ +V GVS + + + L G FF+FWV+ H YPF KGLMGR+ RTPTIV VW L++ SLLW+ + P Sbjct: 857 RNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP 1000
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 5.748e-36 Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKAS----DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRV 420 RNEQFW+IGG S+HL AVLQG+LKV+AG++ +FT+T K+S DED +F +LY+FKW ++N+V ++ V + S W L G FFA WV++H+YPF KGLMGR +TPT+V VW+ L+A SLL++ + Sbjct: 823 RNEQFWLIGGTSAHLVAVLQGILKVIAGVEISFTLTSKSSTGGDDEDDEFADLYLFKWTALMIPPLTIIILNIVAILFAVCRTVFSANPQWSNLLGGTFFASWVLLHMYPFAKGLMGRGGKTPTVVYVWSGLIAICLSLLYITI 966
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 3.726e-35 Identity = 67/146 (45.89%), Postives = 94/146 (64.38%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFT 432 RNEQ+W+I G SSHL+AV+QG+LKV+AGI+ +FT+T K+ +D + + +LY+ KW ++N++ +V I W L G FF+FWV+ HLYPF KGLMGR+ +TPTIV VW L+A SLLW ++P T Sbjct: 949 RNEQWWLISGTSSHLYAVVQGVLKVIAGIEISFTLTTKSGGDDNEDIYADLYIVKWSSLMIPPIVIAMVNIIAIVVAFIRTIYQAVPQWSKLIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWAGLIAITISLLWTAINPNT 1094
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 8.301e-35 Identity = 71/154 (46.10%), Postives = 93/154 (60.39%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD------------FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426 RNEQFWVIGG S+H AVLQGLLKV+AG+D +FT+T K + GD F ELY +W ++N V + + + S + W L G FF+FWV+ HLYPF KGL+GR+ R PTIV VW+ L++ I SLLWV ++P Sbjct: 1046 RNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKPGNGGGDGGVGGEGNDDEAFAELYEVRWSYLMVPPVTIMMVNAVAIAVAAARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLISMIISLLWVYINP 1199
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 1.084e-34 Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426 RNEQFW+I G S+HL+AV+QGLLKV+AGI+ +FT+T KA+ +D + + +LY+ KW ++N++ + + I S WG G FF+FWV+ HL PF KGLMGR+ +TPTIV VW+ LL+ SLLWV + P Sbjct: 987 RNEQFWLISGTSAHLYAVVQGLLKVMAGIEISFTLTAKAAADDNEDIYADLYIVKWSSLLIPPITIGMVNIIAIAFAFARTIYSDNPRWGKFIGGGFFSFWVLAHLNPFAKGLMGRRGKTPTIVFVWSGLLSITVSLLWVAISP 1130
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 2.505e-23 Identity = 60/168 (35.71%), Postives = 84/168 (50.00%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKAS------------DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGY-QSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT-PTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQ 462 R+E+ W++ S+ L AV QG+L GID F+ AS +E+ +W V NL GVVA V+Y ++ GY QSWG L KL A WV+ HL FL+GL+ ++R PTI V+W+++ + SLLWV F+ P EQ Sbjct: 690 RDEKLWMVTATSASLAAVFQGILSACTGIDVAFSTETAASPPKRPAAGNDDGEEEAALASEITMRWTNLLVAPTSVVVANLAGVVAAVAYGVDHGYYQSWGALGAKLALAGWVVAHLQGFLRGLLAPRDRAPPTIAVLWSVVFVSVASLLWVHAASFSAPTAAPTTEQ 857
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 6.822e-21 Identity = 48/143 (33.57%), Postives = 81/143 (56.64%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFK--ASDEDGD-FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRV 420 RN QFW+ S++L AVLQ + KV+ D +F +T K A DE D + +LY+ +W ++N++G + ++ + W + G +FF FWV+ HLYPF KG++G+ +TP +V+VW I ++L++ + Sbjct: 776 RNGQFWMTASCSAYLAAVLQVVTKVVFRRDISFKLTSKLPAGDEKKDPYADLYVVRWTWLMITPIIIILVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYINI 918 The following BLAST results are available for this feature:
BLAST of CX299687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299687 ID=CX299687; Name=CX299687; organism=Citrus clementina; type=EST; length=479bpback to top |