CX299687

Overview
NameCX299687
Unique NameCX299687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 9.475e-39
Identity = 75/144 (52.08%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFW+IGG S+HL AV+QGLLKV+AGI+ +FT+T KAS ED D  F +LY+ KW           ++NLV +V G S  I S    WG L G +FF+ WV+ H+YPF KGLMGR+ + PTIV VW+ L++   SLLW+ + P
Sbjct:  881 RNEQFWLIGGTSAHLAAVVQGLLKVIAGIEISFTLTSKASGEDEDDIFADLYIVKWTGLFIMPLTIIIVNLVAIVIGASRTIYSVIPQWGKLMGGIFFSLWVLTHMYPFAKGLMGRRGKVPTIVYVWSGLVSITVSLLWITISP 1024          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38
Identity = 74/145 (51.03%), Postives = 100/145 (68.97%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKAS---DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFWVIGG S+H  AVLQGLLKV+AG+D +FT+T K+S   D D +F +LY+ KW           ++N++ +  G++  + S +  W  L G +FF+FWV+ HLYPF KGLMGR+ R PTIV VW+ LL+ I SLLWV ++P
Sbjct: 1024 RNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSSAPEDGDDEFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVLCHLYPFAKGLMGRRGRVPTIVFVWSGLLSIIVSLLWVYINP 1168          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.787e-37
Identity = 76/144 (52.78%), Postives = 96/144 (66.67%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFWVIGG S+HL AVLQGLLKV+AGI+ +FT+T KA+ ED D  F ELY+ KW            IN++ +V GVS  + +    +  L G  FF+FWV+ H YPF KGLMGR+ RTPTIV VW  L++   SLLW+ + P
Sbjct:  857 RNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP 1000          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.787e-37
Identity = 76/144 (52.78%), Postives = 96/144 (66.67%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFWVIGG S+HL AVLQGLLKV+AGI+ +FT+T KA+ ED D  F ELY+ KW            IN++ +V GVS  + +    +  L G  FF+FWV+ H YPF KGLMGR+ RTPTIV VW  L++   SLLW+ + P
Sbjct:  857 RNEQFWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPFAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP 1000          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.748e-36
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKAS----DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRV 420
            RNEQFW+IGG S+HL AVLQG+LKV+AG++ +FT+T K+S    DED +F +LY+FKW           ++N+V ++  V   + S    W  L G  FFA WV++H+YPF KGLMGR  +TPT+V VW+ L+A   SLL++ +
Sbjct:  823 RNEQFWLIGGTSAHLVAVLQGILKVIAGVEISFTLTSKSSTGGDDEDDEFADLYLFKWTALMIPPLTIIILNIVAILFAVCRTVFSANPQWSNLLGGTFFASWVLLHMYPFAKGLMGRGGKTPTVVYVWSGLIAICLSLLYITI 966          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.726e-35
Identity = 67/146 (45.89%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDPFT 432
            RNEQ+W+I G SSHL+AV+QG+LKV+AGI+ +FT+T K+  +D +  + +LY+ KW           ++N++ +V      I      W  L G  FF+FWV+ HLYPF KGLMGR+ +TPTIV VW  L+A   SLLW  ++P T
Sbjct:  949 RNEQWWLISGTSSHLYAVVQGVLKVIAGIEISFTLTTKSGGDDNEDIYADLYIVKWSSLMIPPIVIAMVNIIAIVVAFIRTIYQAVPQWSKLIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWAGLIAITISLLWTAINPNT 1094          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.301e-35
Identity = 71/154 (46.10%), Postives = 93/154 (60.39%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD------------FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFWVIGG S+H  AVLQGLLKV+AG+D +FT+T K  +  GD            F ELY  +W           ++N V +    +  + S +  W  L G  FF+FWV+ HLYPF KGL+GR+ R PTIV VW+ L++ I SLLWV ++P
Sbjct: 1046 RNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKPGNGGGDGGVGGEGNDDEAFAELYEVRWSYLMVPPVTIMMVNAVAIAVAAARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLISMIISLLWVYINP 1199          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.084e-34
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASDEDGD--FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVDP 426
            RNEQFW+I G S+HL+AV+QGLLKV+AGI+ +FT+T KA+ +D +  + +LY+ KW           ++N++ +    +  I S    WG   G  FF+FWV+ HL PF KGLMGR+ +TPTIV VW+ LL+   SLLWV + P
Sbjct:  987 RNEQFWLISGTSAHLYAVVQGLLKVMAGIEISFTLTAKAAADDNEDIYADLYIVKWSSLLIPPITIGMVNIIAIAFAFARTIYSDNPRWGKFIGGGFFSFWVLAHLNPFAKGLMGRRGKTPTIVFVWSGLLSITVSLLWVAISP 1130          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.505e-23
Identity = 60/168 (35.71%), Postives = 84/168 (50.00%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKAS------------DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGY-QSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT-PTIVVVWTILLACIFSLLWVRVDPFTTRVTGPDVEQ 462
            R+E+ W++   S+ L AV QG+L    GID  F+    AS            +E+         +W           V NL GVVA V+Y ++ GY QSWG L  KL  A WV+ HL  FL+GL+  ++R  PTI V+W+++   + SLLWV    F+     P  EQ
Sbjct:  690 RDEKLWMVTATSASLAAVFQGILSACTGIDVAFSTETAASPPKRPAAGNDDGEEEAALASEITMRWTNLLVAPTSVVVANLAGVVAAVAYGVDHGYYQSWGALGAKLALAGWVVAHLQGFLRGLLAPRDRAPPTIAVLWSVVFVSVASLLWVHAASFSAPTAAPTTEQ 857          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.822e-21
Identity = 48/143 (33.57%), Postives = 81/143 (56.64%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFK--ASDEDGD-FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRV 420
            RN QFW+    S++L AVLQ + KV+   D +F +T K  A DE  D + +LY+ +W           ++N++G     +  ++  +  W  + G +FF FWV+ HLYPF KG++G+  +TP +V+VW      I ++L++ +
Sbjct:  776 RNGQFWMTASCSAYLAAVLQVVTKVVFRRDISFKLTSKLPAGDEKKDPYADLYVVRWTWLMITPIIIILVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYINI 918          
The following BLAST results are available for this feature:
BLAST of CX299687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CSLD1_ARATH9.475e-3952.08Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD5_ARATH1.238e-3851.03Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD5_ORYSJ1.787e-3752.78Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI1.787e-3752.78Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD6_ARATH5.748e-3647.92Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLD4_ARATH3.726e-3545.89Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD4_ORYSJ8.301e-3546.10Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD3_ORYSJ1.084e-3447.22Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CESAB_ORYSJ2.505e-2335.71Putative cellulose synthase A catalytic subunit 11... [more]
CSLF6_ORYSJ6.822e-2133.57Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionC07001B06SK NTLeaf1 Citrus clementina cDNA clone C07001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299687 ID=CX299687; Name=CX299687; organism=Citrus clementina; type=EST; length=479bp
AGAAACGAACAGTTTTGGGTTATTGGCGGCGTTTCATCCCATCTATTCGC
TGTTTTGCAAGGGCTTCTCAAAGTACTTGCTGGTATTGACACCAACTTCA
CTGTCACCTTCAAGGCATCAGATGAAGACGGCGATTTTACTGAGCTCTAT
ATGTTCAAATGGACAACACTACTTATTCCACCAACAACTCTTCTTGTCAT
AAACTTGGTTGGTGTAGTTGCGGGTGTCTCGTATGCCATCAACAGCGGGT
ATCAATCATGGGGTCCTCTCTTTGGTAAGCTATTCTTTGCCTTTTGGGTG
ATCGTCCATCTTTACCCCTTCCTCAAAGGTTTGATGGGACGCCAAAACCG
GACACCCACCATTGTTGTCGTGTGGACAATTCTCCTTGCCTGCATATTCT
CTTTACTATGGGTGCGAGTTGATCCCTTTACCACCAGAGTCACTGGTCCT
GATGTCGAGCAATGTGGAATCAACTGCTG
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