CX299687

Overview
NameCX299687
Unique NameCX299687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 42/139 (30.22%), Postives = 66/139 (47.48%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKV--LAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQ--SWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSL 405
            RNEQF++IG  + +  AVL  +LK   L G+    T    AS     F ELY  +W            +N+  + A +  A+  G+     G     L F  W+++ +YPF  G+MGR ++ P I+ V  ++   I +L
Sbjct:  717 RNEQFYIIGATAVYPLAVLHIVLKCFGLKGVSFKLTAKQVASSTSEKFAELYDVQWAPLLFPTIVVIAVNICAIGAAIGKALFGGWSLMQMGDASLGLVFNVWILLLIYPFALGIMGRWSKRPYILFVLIVISFVIIAL 855          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11
Identity = 45/159 (28.30%), Postives = 72/159 (45.28%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFK--ASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGK-------LFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVD-PFTTRVTG 447
            RNEQF++IG    +  AVL   LK++ G    F +T K  A+     F +LY  +W           V+N+  V   V  A      +WGPL          + F  W++V LYPF  G+MG+  + P ++ V   +     + ++V    P+   ++G
Sbjct:  689 RNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTAASSGDKFADLYTVRWVPLLIPTIVIMVVNVAAVGVAVGKAA-----AWGPLTEPGWLAVLGMVFNVWILVLLYPFALGVMGQWGKRPAVLFVAMAMAVAAVAAMYVAFGAPYQAELSG 842          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.400e-11
Identity = 43/134 (32.09%), Postives = 62/134 (46.27%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFK--------ASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSW---------GPLFGKLFFAFWVIVHLYPFLKGLMGRQNR 351
            RNEQFW++   S++L AV Q  LKV  G + +F +T K         + +D  + ELY  +W            +N    VA ++ A   G   W               + F  WV+VHLYPF  GLMGR+++
Sbjct:  672 RNEQFWMVSATSAYLAAVAQVALKVATGKEISFKLTSKHLASSATPVAGKDRQYAELYAVRWTALMAPTAAALAVN----VASMAAAGGGGRWWWWDAPSAAAAAAAALPVAFNVWVVVHLYPFALGLMGRRSK 801          
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11
Identity = 46/159 (28.93%), Postives = 73/159 (45.91%), Query Frame = 1
Query:    1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASD-EDGD-FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGK-------LFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVD-PFTTRVTG 447
            RNEQF++IG    +  AVL   LK++ G    F +T K +    GD F +LY  +W           V+N+  V   V  A      +WGPL          + F  W++V LYPF  G+MG+  + P ++ V   +     + ++V    P+   ++G
Sbjct:  719 RNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVIIVVNVAAVGVAVGKAA-----AWGPLTEPGWLAVLGMVFNVWILVLLYPFALGVMGQWGKRPAVLFVAMAMAVAAVAAMYVAFGAPYQAELSG 872          
The following BLAST results are available for this feature:
BLAST of CX299687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CSLF8_ORYSJ1.684e-1130.22Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF1_ORYSJ4.900e-1128.30Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF7_ORYSJ6.400e-1132.09Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLF2_ORYSJ8.359e-1128.93Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC07001B06SK NTLeaf1 Citrus clementina cDNA clone C07001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299687 ID=CX299687; Name=CX299687; organism=Citrus clementina; type=EST; length=479bp
AGAAACGAACAGTTTTGGGTTATTGGCGGCGTTTCATCCCATCTATTCGC
TGTTTTGCAAGGGCTTCTCAAAGTACTTGCTGGTATTGACACCAACTTCA
CTGTCACCTTCAAGGCATCAGATGAAGACGGCGATTTTACTGAGCTCTAT
ATGTTCAAATGGACAACACTACTTATTCCACCAACAACTCTTCTTGTCAT
AAACTTGGTTGGTGTAGTTGCGGGTGTCTCGTATGCCATCAACAGCGGGT
ATCAATCATGGGGTCCTCTCTTTGGTAAGCTATTCTTTGCCTTTTGGGTG
ATCGTCCATCTTTACCCCTTCCTCAAAGGTTTGATGGGACGCCAAAACCG
GACACCCACCATTGTTGTCGTGTGGACAATTCTCCTTGCCTGCATATTCT
CTTTACTATGGGTGCGAGTTGATCCCTTTACCACCAGAGTCACTGGTCCT
GATGTCGAGCAATGTGGAATCAACTGCTG
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