CX299687
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11 Identity = 42/139 (30.22%), Postives = 66/139 (47.48%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKV--LAGIDTNFTVTFKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQ--SWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSL 405 RNEQF++IG + + AVL +LK L G+ T AS F ELY +W +N+ + A + A+ G+ G L F W+++ +YPF G+MGR ++ P I+ V ++ I +L Sbjct: 717 RNEQFYIIGATAVYPLAVLHIVLKCFGLKGVSFKLTAKQVASSTSEKFAELYDVQWAPLLFPTIVVIAVNICAIGAAIGKALFGGWSLMQMGDASLGLVFNVWILLLIYPFALGIMGRWSKRPYILFVLIVISFVIIAL 855
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11 Identity = 45/159 (28.30%), Postives = 72/159 (45.28%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFK--ASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGK-------LFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVD-PFTTRVTG 447 RNEQF++IG + AVL LK++ G F +T K A+ F +LY +W V+N+ V V A +WGPL + F W++V LYPF G+MG+ + P ++ V + + ++V P+ ++G Sbjct: 689 RNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTAASSGDKFADLYTVRWVPLLIPTIVIMVVNVAAVGVAVGKAA-----AWGPLTEPGWLAVLGMVFNVWILVLLYPFALGVMGQWGKRPAVLFVAMAMAVAAVAAMYVAFGAPYQAELSG 842
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.400e-11 Identity = 43/134 (32.09%), Postives = 62/134 (46.27%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFK--------ASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSW---------GPLFGKLFFAFWVIVHLYPFLKGLMGRQNR 351 RNEQFW++ S++L AV Q LKV G + +F +T K + +D + ELY +W +N VA ++ A G W + F WV+VHLYPF GLMGR+++ Sbjct: 672 RNEQFWMVSATSAYLAAVAQVALKVATGKEISFKLTSKHLASSATPVAGKDRQYAELYAVRWTALMAPTAAALAVN----VASMAAAGGGGRWWWWDAPSAAAAAAAALPVAFNVWVVVHLYPFALGLMGRRSK 801
BLAST of CX299687 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11 Identity = 46/159 (28.93%), Postives = 73/159 (45.91%), Query Frame = 1 Query: 1 RNEQFWVIGGVSSHLFAVLQGLLKVLAGIDTNFTVTFKASD-EDGD-FTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGK-------LFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWTILLACIFSLLWVRVD-PFTTRVTG 447 RNEQF++IG + AVL LK++ G F +T K + GD F +LY +W V+N+ V V A +WGPL + F W++V LYPF G+MG+ + P ++ V + + ++V P+ ++G Sbjct: 719 RNEQFYMIGSTGVYPTAVLYMALKLVTGKGIYFRLTSKQTTASSGDKFADLYTVRWVPLLIPTIVIIVVNVAAVGVAVGKAA-----AWGPLTEPGWLAVLGMVFNVWILVLLYPFALGVMGQWGKRPAVLFVAMAMAVAAVAAMYVAFGAPYQAELSG 872 The following BLAST results are available for this feature:
BLAST of CX299687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299687 ID=CX299687; Name=CX299687; organism=Citrus clementina; type=EST; length=479bpback to top |