CX299689

Overview
NameCX299689
Unique NameCX299689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = -1
Query:  254 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRV 412
            A TT DRQ  C CLK+    + G++P++ AG+PS+CGV IPY I+PSTDC RV
Sbjct:   66 AATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKI+PSTDC  V+
Sbjct:   61 AKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKI+PSTDC  V+
Sbjct:   61 AKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A TTPDRQAACNC+K A  +I  +  N AA LP +CGV IPYKI+ ST+C  V+
Sbjct:   63 ANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  254 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRV 412
            ARTT DR+AACNCLK A   + G+    AA +PS+CGV IPY I+ STDC RV
Sbjct:   67 ARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A TTPDRQAACNCLK A G+I  +  N AA LP +C V IPYKI+ ST+C  +R
Sbjct:   62 AVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKI+PSTDC  V+
Sbjct:   61 AKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A++  DR+ AC CLK A   I+GI    AAGLP  CGV IPYKI+PSTDC +V+
Sbjct:   61 AKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  254 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRV 412
            ARTT DR+AACNCLK A   I G+    AA +PS+CGV +PY I+ STDC RV
Sbjct:   65 ARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A TT DRQAACNCLK A G I  + P  AA LP +C V IPYKI+ +T+C  ++
Sbjct:   64 APTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
The following BLAST results are available for this feature:
BLAST of CX299689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NLTP4_ORYSJ2.331e-1256.60Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP1_SOLPN2.331e-1261.11Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP1_SOLLC2.331e-1261.11Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP5_LENCU3.976e-1259.26Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP_MAIZE5.192e-1260.38Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP_CICAR5.192e-1261.11Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP2_SOLLC5.192e-1259.26Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP2_TOBAC8.857e-1257.41Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_SORBI8.857e-1260.38Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP3_LENCU3.366e-1155.56Non-specific lipid-transfer protein 3 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionC07001B10SK NTLeaf1 Citrus clementina cDNA clone C07001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299689 ID=CX299689; Name=CX299689; organism=Citrus clementina; type=EST; length=412bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGGCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGGTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGC
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