CX299722

Overview
NameCX299722
Unique NameCX299722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 4.026e-23
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQ
Sbjct:   18 TATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQ 86          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 4.026e-23
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQ
Sbjct:   18 TATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQ 86          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 4.026e-23
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQ
Sbjct:   18 TATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQ 86          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 4.026e-23
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQ
Sbjct:   18 TATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQ 86          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +Q+YAIRQ
Sbjct:   18 TATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQ 86          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +Q+YAIRQ
Sbjct:   18 TATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQ 86          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22
Identity = 45/69 (65.22%), Postives = 59/69 (85.51%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AV YCKRG GL+K+NG P+E +EP++L++K  EP+LLLG+ +FAGVD+R+RV GGGH +QIYAIRQ
Sbjct:   20 TATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQ 88          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.409e-22
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AV YCKRG+GL+++NG P++ +EP++L++K  EP+LLLG+ +FAGVD+RIRV GGGH +QIYAIRQ
Sbjct:   20 TATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYAIRQ 88          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_SCHPO (40S ribosomal protein S16 OS=Schizosaccharomyces pombe GN=rps16a PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.452e-22
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 3
Query:  267 AVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            A AV +CK G+GLIK+NG P+ LV+PEILR K YEPIL+ G  +FAGVD+R+RV GGGH SQIYAIRQ
Sbjct:   13 ATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQ 80          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.918e-22
Identity = 43/69 (62.32%), Postives = 59/69 (85.51%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AV YCKRG G++++NG P++LVEP +L++K  EPILLLG+ +F+GVD+R+ VKGGGH +Q+YAIRQ
Sbjct:   23 TATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQ 91          
The following BLAST results are available for this feature:
BLAST of CX299722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RS16_PIG4.026e-2368.1240S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P... [more]
RS16_MOUSE4.026e-2368.1240S ribosomal protein S16 OS=Mus musculus GN=Rps16... [more]
RS16_HUMAN4.026e-2368.1240S ribosomal protein S16 OS=Homo sapiens GN=RPS16... [more]
RS16_BOVIN4.026e-2368.1240S ribosomal protein S16 OS=Bos taurus GN=RPS16 P... [more]
RS16_ICTPU1.530e-2266.6740S ribosomal protein S16 OS=Ictalurus punctatus G... [more]
RS16_HETFO1.530e-2266.6740S ribosomal protein S16 OS=Heteropneustes fossil... [more]
RS16_DROME1.530e-2265.2240S ribosomal protein S16 OS=Drosophila melanogast... [more]
RS16_AEDAE3.409e-2263.7740S ribosomal protein S16 OS=Aedes aegypti GN=RpS1... [more]
RS16_SCHPO4.452e-2269.1240S ribosomal protein S16 OS=Schizosaccharomyces p... [more]
RS16_SPOFR9.918e-2262.3240S ribosomal protein S16 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionC07001F04SK NTLeaf1 Citrus clementina cDNA clone C07001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299722 ID=CX299722; Name=CX299722; organism=Citrus clementina; type=EST; length=472bp
CGGCACGAGGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGATCA
CACTGGTTAAGAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGAAAA
TAAAAGTATGGGTACTGTTATTACCCGTCAATTGTACGATGGTCTCAGTT
TGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCTCTT
TGTTTAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTCTCTCTCT
CTCCCGCAAGAAGACTGCGGTCGCCGTGACTTACTGCAAGCGCGGTCGTG
GGTTGATCAAGATTAACGGCTGCCCGATCGAGTTAGTCGAGCCGGAGATC
CTCCGCTTCAAGGCATACGAGCCAATTCTCTTGCTCGGGCGACACCGATT
CGCCGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACGTCGC
AGATCTACGCCATCCGTCAGAG
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