CX299739

Overview
NameCX299739
Unique NameCX299739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299739 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 6.120e-53
Identity = 97/150 (64.67%), Postives = 125/150 (83.33%), Query Frame = 1
Query:    1 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 450
            E++K + LCDLY+++++TQ+VIF NTR KV++LT K+++ + TVSA H D+ Q+ RD IM EFRSGSSR+LI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D  M+ +I+KFY+  IEE+P+N+ +L
Sbjct:  245 EDFKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDEDVGMMREIEKFYSTQIEEMPANIGEL 394          
BLAST of CX299739 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 7.993e-53
Identity = 99/133 (74.44%), Postives = 115/133 (86.47%), Query Frame = 1
Query:    1 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 399
            E+WK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HGDM Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+
Sbjct:  250 EDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 382          
BLAST of CX299739 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.363e-52
Identity = 97/151 (64.24%), Postives = 122/151 (80.79%), Query Frame = 1
Query:    1 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 453
            E+WK +TLCDLY+ L ITQ+VIF NT+ KV+WLTD+MR ++ TV A HGDM Q  RD IM +FRSG+SRVLI+TD+ ARGIDVQQ+SLVINYDLP   ENY+HRIGRSGRFGRKG AIN +T+ D   L  ++K+Y+  I+E+PSNV D++
Sbjct:  249 EDWKFDTLCDLYDNLTITQAVIFCNTKIKVNWLTDQMRKQNFTVVAMHGDMKQEERDAIMNDFRSGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLTKSDTIELKALEKYYSTKIKEMPSNVNDVM 399          
BLAST of CX299739 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.363e-52
Identity = 95/151 (62.91%), Postives = 122/151 (80.79%), Query Frame = 1
Query:    1 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 453
            E+WK +TLCDLY+ L ITQ+VIF NT+ KV+WL D+M+ ++ TV A HGDM Q+ RD IM +FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKG AIN +T+DD   L + +K+Y+  I+E+P N+ D++
Sbjct:  249 EDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKEFEKYYSTKIKEMPMNINDIM 399          
BLAST of CX299739 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 203.371 bits (516), Expect = 5.181e-52
Identity = 100/151 (66.23%), Postives = 124/151 (82.12%), Query Frame = 1
Query:    1 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 453
            EE+K E L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELPS++A LL
Sbjct:  244 EEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
BLAST of CX299739 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.181e-52
Identity = 100/151 (66.23%), Postives = 124/151 (82.12%), Query Frame = 1
Query:    1 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 453
            EE+K E L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELPS++A LL
Sbjct:  244 EEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
BLAST of CX299739 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.181e-52
Identity = 97/151 (64.24%), Postives = 123/151 (81.46%), Query Frame = 1
Query:    1 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 453
            E+WK  TLCD+Y++L ITQ+VIF NT++KVD LT++MR  + TV++ HGDM Q  R+ I++ FRSG +RVLITTD+LARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINFV   D R+L DI++FY+  I+E+P N A ++
Sbjct:  255 EDWKFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIEQFYSTQIDEMPVNFASII 405          
BLAST of CX299739 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 6.766e-52
Identity = 97/150 (64.67%), Postives = 124/150 (82.67%), Query Frame = 1
Query:    1 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 450
            E++K + LCDLY+++++TQ+VIF NTR KV++LT+K+R +  TVSA H D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+P+++  L
Sbjct:  246 EDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of CX299739 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.969e-51
Identity = 96/150 (64.00%), Postives = 125/150 (83.33%), Query Frame = 1
Query:    1 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 450
            E++K + L DLY+++++TQ+VIF NTRRKV+ LT K+   + TVS+ + D+ Q  RD+IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D   + +I+KFY+  IEELP++VA++
Sbjct:  245 EQYKFDCLSDLYDSISVTQAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREIEKFYSTQIEELPADVAEM 394          
BLAST of CX299739 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.969e-51
Identity = 96/150 (64.00%), Postives = 122/150 (81.33%), Query Frame = 1
Query:    1 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 450
            E++K + LCDLY+++++TQ+VIF NTR KV++LT K++  + TVSA H D+ Q  RD IM EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+P+++  L
Sbjct:  246 EDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEKFYSTQIEEMPADIGAL 395          
The following BLAST results are available for this feature:
BLAST of CX299739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_PICGU6.120e-5364.67ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
FAL1_CHAGB7.993e-5374.44ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
FAL1_LODEL1.363e-5264.24ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
FAL1_CANAL1.363e-5262.91ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]
IF4A_YEAST5.181e-5266.23ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS75.181e-5266.23ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_DICDI5.181e-5264.24Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
IF4A_CANAL6.766e-5264.67ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
IF4A_VANPO1.969e-5164.00ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
IF4A_DEBHA1.969e-5164.00ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]

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Properties
Property NameValue
Genbank descriptionC07001H03SK NTLeaf1 Citrus clementina cDNA clone C07001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299739 ID=CX299739; Name=CX299739; organism=Citrus clementina; type=EST; length=515bp
GAAGAATGGAAGCTTGAAACACTCTGTGATCTTTATGAGACTCTGGCCAT
AACCCAGAGTGTCATCTTTGTGAACACTCGGCGAAAGGTCGACTGGCTTA
CGGACAAGATGCGAAGCCGTGACCATACAGTCTCTGCCACTCATGGGGAC
ATGGATCAGAACACCCGAGATATCATTATGCGTGAATTTCGCTCTGGTTC
TTCTCGTGTTCTCATCACCACTGATCTGTTGGCTCGTGGTATTGATGTGC
AGCAAGTTTCACTTGTCATAAATTATGATCTGCCGACTCAACCAGAAAAC
TACCTTCACCGTATTGGACGAAGTGGTCGATTTGGAAGAAAGGGTGTTGC
CATTAATTTTGTGACAAGGGATGATGAGAGAATGCTTTTTGATATTCAAA
AGTTCTATAACGTGGTCATTGAGGAGCTGCCTTCAAACGTTGCTGACCTT
CTTTGAGGAGGTTCTGTTTTTGTAAGTTTGTCGAGGCAAGAAGGGGTTTC
CTGATTTTGCAAGTA
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