CX299781

Overview
NameCX299781
Unique NameCX299781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 7.378e-43
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHGA+SYLLQD DGQ++E HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD EA+ A  R ++LEGI+PALETAHALAYLE LCP L    ++V+N SGRGDKDV+T  +Y +
Sbjct:  294 GVLHGAMSYLLQDADGQVVEAHSISAGLDYPGVGPEHSYLKDIGRAEYYSVTDTEAVAACVRLAQLEGILPALETAHALAYLETLCPQLTGQPRIVINCSGRGDKDVETIGRYFE 408          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.803e-42
Identity = 83/114 (72.81%), Postives = 97/114 (85.09%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+S LLQD DGQ++E HSISAGLDYPGVGPEHS+L++ GRAEY  VTD +AL+A +  S LEGIIPALETAHA A+LE+LCPTLADGT+VV+N SGRGDKDV T  + L
Sbjct:  301 GVLHGAMSLLLQDGDGQVMEAHSISAGLDYPGVGPEHSYLREIGRAEYAAVTDQQALDALRLVSELEGIIPALETAHAFAWLEQLCPTLADGTEVVINCSGRGDKDVNTVAEKL 414          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.817e-41
Identity = 82/116 (70.69%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            G+LHG++S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LKD GRAEY +VTD EAL+A K  S LEGIIPALETAHA A+LEKLCPTL   T++V+N SGRGDKDV T    L +
Sbjct:  298 GILHGSMSLLLQDKDGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDAEALDALKLVSELEGIIPALETAHAFAWLEKLCPTLDKDTEIVINCSGRGDKDVNTVASSLNI 413          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.373e-41
Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+L++ GRAEY  VTD EALEA +  SRLEGIIPALETAHA A+LE LCPTL+ GT+VV+N SGRGDKDV T  + L
Sbjct:  299 GVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDAEALEALQLVSRLEGIIPALETAHAFAWLETLCPTLSAGTEVVLNCSGRGDKDVNTVAERL 412          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.100e-41
Identity = 82/114 (71.93%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY  VTD EA+EA +  S+LEGIIPALETAHA AYLEKLCPTL   +++V+N SGRGDKDV T  + L
Sbjct:  300 GVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTVAEKL 413          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.100e-41
Identity = 82/114 (71.93%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY  VTD EA+EA +  S+LEGIIPALETAHA AYLEKLCPTL   +++V+N SGRGDKDV T  + L
Sbjct:  300 GVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTVAEKL 413          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.048e-41
Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+L+D GRAEY  VTDDEA+ A +  S LEGIIPALETAHA A+LE LCPTL +G+++V+N SGRGDKDV T  + L
Sbjct:  301 GVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLRDIGRAEYGAVTDDEAITALRLVSELEGIIPALETAHAFAWLEMLCPTLPNGSEIVINCSGRGDKDVNTVAEKL 414          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.048e-41
Identity = 86/123 (69.92%), Postives = 96/123 (78.05%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCP--------TLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHGA+SYLLQDE+GQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEYY VTDDEA+EA    SRLEGIIPALETAHALAYL+ L P         +    +VVVN SGRGDKD+ T  KYLQ
Sbjct:  297 GVLHGAMSYLLQDEEGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYYAVTDDEAVEALLLLSRLEGIIPALETAHALAYLKTLAPQQGLRPANAIGPQQRVVVNCSGRGDKDLNTVFKYLQ 419          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.287e-41
Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            G+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS+LKD GRAEY +VTD EAL A K  S LEGIIPALETAHA A+LEKLCPTL   T++V+N SGRGDKDV T    L +
Sbjct:  299 GILHGSMSLLLQDKNGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDTEALNALKLVSELEGIIPALETAHAFAWLEKLCPTLEKNTEIVINCSGRGDKDVNTVASSLDI 414          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.009e-40
Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+S LLQD DGQ+ E HSISAGLDYPGVGPEHS+L++ GRAEY  VTD +AL A +  S LEGIIPALETAHA A+LE+LCPTL DG++VV+N SGRGDKDV T  + L
Sbjct:  301 GVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDQQALGALRLVSELEGIIPALETAHAFAWLEQLCPTLPDGSEVVINCSGRGDKDVNTVAEKL 414          
The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB_THEEB7.378e-4371.30Tryptophan synthase beta chain OS=Thermosynechococ... [more]
TRPB_SYNSC2.803e-4272.81Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMP1.817e-4170.69Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNPW2.373e-4173.68Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMT3.100e-4171.93Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM13.100e-4171.93Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNS34.048e-4171.05Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNJB4.048e-4169.92Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROM55.287e-4169.83Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNPX2.009e-4071.05Tryptophan synthase beta chain OS=Synechococcus sp... [more]

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Properties
Property NameValue
Genbank descriptionC07002D05SK NTLeaf1 Citrus clementina cDNA clone C07002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bp
GGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATGGGCA
AATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGAGTTG
GACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTATAAT
GTCACAGATGATGAAGCATTGGAAGCTTTCAAGAGGTCATCACGGCTAGA
GGGTATAATCCCAGCTTTGGAGACTGCTCATGCATTGGCTTATTTGGAGA
AGCTATGCCCAACTCTTGCTGATGGTACTAAGGTTGTGGTTAACTTCAGT
GGCAGAGGTGACAAGGATGTCCAGACAGCGATCAAATATTTGCAAGTTTG
ATGGTAATGCTTGTAACCCACAATATATGATTCATTTACTGAAAACAAAT
AAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTTGTATCATTAGTTATTT
CAGAGATGTGAGAACCATCTTATGTAATTTGAGTTAAAACTTTATAAAAA
AAAAAAAAAAAA
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