CX299781
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 7.378e-43 Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345 GVLHGA+SYLLQD DGQ++E HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD EA+ A R ++LEGI+PALETAHALAYLE LCP L ++V+N SGRGDKDV+T +Y + Sbjct: 294 GVLHGAMSYLLQDADGQVVEAHSISAGLDYPGVGPEHSYLKDIGRAEYYSVTDTEAVAACVRLAQLEGILPALETAHALAYLETLCPQLTGQPRIVINCSGRGDKDVETIGRYFE 408
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 2.803e-42 Identity = 83/114 (72.81%), Postives = 97/114 (85.09%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHGA+S LLQD DGQ++E HSISAGLDYPGVGPEHS+L++ GRAEY VTD +AL+A + S LEGIIPALETAHA A+LE+LCPTLADGT+VV+N SGRGDKDV T + L Sbjct: 301 GVLHGAMSLLLQDGDGQVMEAHSISAGLDYPGVGPEHSYLREIGRAEYAAVTDQQALDALRLVSELEGIIPALETAHAFAWLEQLCPTLADGTEVVINCSGRGDKDVNTVAEKL 414
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.817e-41 Identity = 82/116 (70.69%), Postives = 95/116 (81.90%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348 G+LHG++S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LKD GRAEY +VTD EAL+A K S LEGIIPALETAHA A+LEKLCPTL T++V+N SGRGDKDV T L + Sbjct: 298 GILHGSMSLLLQDKDGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDAEALDALKLVSELEGIIPALETAHAFAWLEKLCPTLDKDTEIVINCSGRGDKDVNTVASSLNI 413
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 2.373e-41 Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+L++ GRAEY VTD EALEA + SRLEGIIPALETAHA A+LE LCPTL+ GT+VV+N SGRGDKDV T + L Sbjct: 299 GVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDAEALEALQLVSRLEGIIPALETAHAFAWLETLCPTLSAGTEVVLNCSGRGDKDVNTVAERL 412
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 3.100e-41 Identity = 82/114 (71.93%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY VTD EA+EA + S+LEGIIPALETAHA AYLEKLCPTL +++V+N SGRGDKDV T + L Sbjct: 300 GVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTVAEKL 413
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 3.100e-41 Identity = 82/114 (71.93%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY VTD EA+EA + S+LEGIIPALETAHA AYLEKLCPTL +++V+N SGRGDKDV T + L Sbjct: 300 GVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTVAEKL 413
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 4.048e-41 Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+L+D GRAEY VTDDEA+ A + S LEGIIPALETAHA A+LE LCPTL +G+++V+N SGRGDKDV T + L Sbjct: 301 GVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLRDIGRAEYGAVTDDEAITALRLVSELEGIIPALETAHAFAWLEMLCPTLPNGSEIVINCSGRGDKDVNTVAEKL 414
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 4.048e-41 Identity = 86/123 (69.92%), Postives = 96/123 (78.05%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCP--------TLADGTKVVVNFSGRGDKDVQTAIKYLQ 345 GVLHGA+SYLLQDE+GQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEYY VTDDEA+EA SRLEGIIPALETAHALAYL+ L P + +VVVN SGRGDKD+ T KYLQ Sbjct: 297 GVLHGAMSYLLQDEEGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYYAVTDDEAVEALLLLSRLEGIIPALETAHALAYLKTLAPQQGLRPANAIGPQQRVVVNCSGRGDKDLNTVFKYLQ 419
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 5.287e-41 Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348 G+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS+LKD GRAEY +VTD EAL A K S LEGIIPALETAHA A+LEKLCPTL T++V+N SGRGDKDV T L + Sbjct: 299 GILHGSMSLLLQDKNGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDTEALNALKLVSELEGIIPALETAHAFAWLEKLCPTLEKNTEIVINCSGRGDKDVNTVASSLDI 414
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 2.009e-40 Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHGA+S LLQD DGQ+ E HSISAGLDYPGVGPEHS+L++ GRAEY VTD +AL A + S LEGIIPALETAHA A+LE+LCPTL DG++VV+N SGRGDKDV T + L Sbjct: 301 GVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDQQALGALRLVSELEGIIPALETAHAFAWLEQLCPTLPDGSEVVINCSGRGDKDVNTVAEKL 414 The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 427
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bpback to top |