CX299781
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_RALSO (Tryptophan synthase beta chain OS=Ralstonia solanacearum GN=trpB PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 2.079e-37 Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327 GVLHG +YLLQDEDGQIIE HSISAGLDYPGVGPEH++LKD GRA+Y +TD EAL+AF R+EGIIPALE++HALAY KL PTL ++VN SGRGDKD+ T Sbjct: 286 GVLHGNRTYLLQDEDGQIIETHSISAGLDYPGVGPEHAWLKDAGRAQYVGITDKEALQAFHDLCRMEGIIPALESSHALAYACKLAPTLPKDKILLVNLSGRGDKDMHT 394
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_THIDA (Tryptophan synthase beta chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=trpB PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 2.715e-37 Identity = 74/112 (66.07%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336 GVLHG SYL+QDE+GQIIE HS+SAGLDYPGVGPEHS+LKD GRAEY + DDEAL AF R EGIIPALE++HA+A +KL PT+ ++VN SGRGDKD+ T K Sbjct: 282 GVLHGFRSYLMQDENGQIIETHSVSAGLDYPGVGPEHSYLKDAGRAEYVPINDDEALAAFHDLCRFEGIIPALESSHAVAQAKKLAPTMKKDQVILVNLSGRGDKDINTVAK 393
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PARDP (Tryptophan synthase beta chain OS=Paracoccus denitrificans (strain Pd 1222) GN=trpB PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 2.715e-37 Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348 GVLHG +YLLQD +GQI+E HSISAGLDYPG+GPEH++LK++GRAEY +VTDDEAL AF+ RLEGIIPALE +HALA++ K+ P L +VVN SGRGDKD+ T K+L V Sbjct: 291 GVLHGNRTYLLQDGEGQILEGHSISAGLDYPGIGPEHAWLKEQGRAEYVSVTDDEALAAFQTLCRLEGIIPALEPSHALAHVVKIAPDLPRDHIMVVNLSGRGDKDIFTVAKHLGV 406
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PSESY (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae GN=trpB PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 4.632e-37 Identity = 74/115 (64.35%), Postives = 93/115 (80.87%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345 GVLHG ++LLQD+DGQII+ HSISAGLDYPG+GPEH++L D GR +Y +VTDDEAL+AF + RLEGIIPALE+AHALA + K PTL +VVN SGRGDKD+QT + +++ Sbjct: 287 GVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVQYTSVTDDEALDAFHKCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHHME 401
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_NITEU (Tryptophan synthase beta chain OS=Nitrosomonas europaea GN=trpB PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 4.632e-37 Identity = 77/109 (70.64%), Postives = 87/109 (79.82%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327 GVLHG +YL+QDE+GQIIE HSISAGLDYPGVGPEH++LKD GRAEY VTDDEAL AF R EGIIPALE++HALAY KL PTL ++VN SGRGDKD+ T Sbjct: 280 GVLHGNRTYLIQDENGQIIETHSISAGLDYPGVGPEHAWLKDCGRAEYVAVTDDEALAAFHALCRFEGIIPALESSHALAYAAKLAPTLNKDQLLLVNLSGRGDKDMAT 388
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36 Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345 GVLHG ++LLQD+DGQII+ HSISAGLDYPG+GPEH++L D GR EY +VTDDEAL AF + RLEGIIPALE+AHALA + K P L +VVN SGRGDKD+QT + ++Q Sbjct: 285 GVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVEYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPNLPKDHLMVVNLSGRGDKDMQTVMHHMQ 399
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_NITMU (Tryptophan synthase beta chain OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=trpB PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36 Identity = 71/112 (63.39%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336 GVLHG +YL+QDE+GQI+E HSISAGLDYPGVGPEH++LKD GRAEY+ +TD++ALEAF EGIIPALE++HALAY +L P L ++VN SGRGDKD+ T + Sbjct: 281 GVLHGNRTYLIQDENGQIVETHSISAGLDYPGVGPEHAWLKDSGRAEYFGITDEQALEAFHALCHYEGIIPALESSHALAYAARLAPALTSDKLLLVNLSGRGDKDMPTVAR 392
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF5 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=trpB PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36 Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327 GVLHG +YL++DEDGQI+ HSISAGLDYPGVGPEH++LKD GRAEY TD+EAL AF R R EGIIPALE+AHALA+ +L PT+ ++VN SGRGDKD+ T Sbjct: 282 GVLHGNRTYLMEDEDGQILPTHSISAGLDYPGVGPEHAYLKDTGRAEYVAATDEEALAAFHRLCRTEGIIPALESAHALAHAFRLAPTMRSDQTIIVNLSGRGDKDIHT 390
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF2 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpB PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36 Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327 GVLHG +YL++DEDGQI+ HSISAGLDYPGVGPEH++LKD GRAEY TD+EAL AF R R EGIIPALE+AHALA+ +L PT+ ++VN SGRGDKD+ T Sbjct: 282 GVLHGNRTYLMEDEDGQILPTHSISAGLDYPGVGPEHAYLKDTGRAEYVAATDEEALAAFHRLCRTEGIIPALESAHALAHAFRLAPTMRSDQTIIVNLSGRGDKDIHT 390
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_THETN (Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.760e-36 Identity = 76/116 (65.52%), Postives = 89/116 (76.72%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348 GVLHG ++YLLQDE+G+I+ HSISAGLDYPGVGPEH++LK+ GRAEY TD+EAL AF SR EGIIPALE+AHALAY KL L + +VVN SGRGDKDV T K + V Sbjct: 274 GVLHGMMTYLLQDEEGKILPVHSISAGLDYPGVGPEHAYLKEIGRAEYVYATDEEALAAFMDLSRTEGIIPALESAHALAYAMKLAKKLDEDKIIVVNLSGRGDKDVNTVAKVMGV 389 The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 427
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bpback to top |