CX299781

Overview
NameCX299781
Unique NameCX299781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_RALSO (Tryptophan synthase beta chain OS=Ralstonia solanacearum GN=trpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.079e-37
Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327
            GVLHG  +YLLQDEDGQIIE HSISAGLDYPGVGPEH++LKD GRA+Y  +TD EAL+AF    R+EGIIPALE++HALAY  KL PTL     ++VN SGRGDKD+ T
Sbjct:  286 GVLHGNRTYLLQDEDGQIIETHSISAGLDYPGVGPEHAWLKDAGRAQYVGITDKEALQAFHDLCRMEGIIPALESSHALAYACKLAPTLPKDKILLVNLSGRGDKDMHT 394          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_THIDA (Tryptophan synthase beta chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=trpB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.715e-37
Identity = 74/112 (66.07%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336
            GVLHG  SYL+QDE+GQIIE HS+SAGLDYPGVGPEHS+LKD GRAEY  + DDEAL AF    R EGIIPALE++HA+A  +KL PT+     ++VN SGRGDKD+ T  K
Sbjct:  282 GVLHGFRSYLMQDENGQIIETHSVSAGLDYPGVGPEHSYLKDAGRAEYVPINDDEALAAFHDLCRFEGIIPALESSHAVAQAKKLAPTMKKDQVILVNLSGRGDKDINTVAK 393          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PARDP (Tryptophan synthase beta chain OS=Paracoccus denitrificans (strain Pd 1222) GN=trpB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.715e-37
Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            GVLHG  +YLLQD +GQI+E HSISAGLDYPG+GPEH++LK++GRAEY +VTDDEAL AF+   RLEGIIPALE +HALA++ K+ P L     +VVN SGRGDKD+ T  K+L V
Sbjct:  291 GVLHGNRTYLLQDGEGQILEGHSISAGLDYPGIGPEHAWLKEQGRAEYVSVTDDEALAAFQTLCRLEGIIPALEPSHALAHVVKIAPDLPRDHIMVVNLSGRGDKDIFTVAKHLGV 406          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PSESY (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae GN=trpB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.632e-37
Identity = 74/115 (64.35%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHG  ++LLQD+DGQII+ HSISAGLDYPG+GPEH++L D GR +Y +VTDDEAL+AF +  RLEGIIPALE+AHALA + K  PTL     +VVN SGRGDKD+QT + +++
Sbjct:  287 GVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVQYTSVTDDEALDAFHKCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHHME 401          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_NITEU (Tryptophan synthase beta chain OS=Nitrosomonas europaea GN=trpB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.632e-37
Identity = 77/109 (70.64%), Postives = 87/109 (79.82%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327
            GVLHG  +YL+QDE+GQIIE HSISAGLDYPGVGPEH++LKD GRAEY  VTDDEAL AF    R EGIIPALE++HALAY  KL PTL     ++VN SGRGDKD+ T
Sbjct:  280 GVLHGNRTYLIQDENGQIIETHSISAGLDYPGVGPEHAWLKDCGRAEYVAVTDDEALAAFHALCRFEGIIPALESSHALAYAAKLAPTLNKDQLLLVNLSGRGDKDMAT 388          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHG  ++LLQD+DGQII+ HSISAGLDYPG+GPEH++L D GR EY +VTDDEAL AF +  RLEGIIPALE+AHALA + K  P L     +VVN SGRGDKD+QT + ++Q
Sbjct:  285 GVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVEYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPNLPKDHLMVVNLSGRGDKDMQTVMHHMQ 399          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_NITMU (Tryptophan synthase beta chain OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=trpB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36
Identity = 71/112 (63.39%), Postives = 88/112 (78.57%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336
            GVLHG  +YL+QDE+GQI+E HSISAGLDYPGVGPEH++LKD GRAEY+ +TD++ALEAF      EGIIPALE++HALAY  +L P L     ++VN SGRGDKD+ T  +
Sbjct:  281 GVLHGNRTYLIQDENGQIVETHSISAGLDYPGVGPEHAWLKDSGRAEYFGITDEQALEAFHALCHYEGIIPALESSHALAYAARLAPALTSDKLLLVNLSGRGDKDMPTVAR 392          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF5 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=trpB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327
            GVLHG  +YL++DEDGQI+  HSISAGLDYPGVGPEH++LKD GRAEY   TD+EAL AF R  R EGIIPALE+AHALA+  +L PT+     ++VN SGRGDKD+ T
Sbjct:  282 GVLHGNRTYLMEDEDGQILPTHSISAGLDYPGVGPEHAYLKDTGRAEYVAATDEEALAAFHRLCRTEGIIPALESAHALAHAFRLAPTMRSDQTIIVNLSGRGDKDIHT 390          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF2 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327
            GVLHG  +YL++DEDGQI+  HSISAGLDYPGVGPEH++LKD GRAEY   TD+EAL AF R  R EGIIPALE+AHALA+  +L PT+     ++VN SGRGDKD+ T
Sbjct:  282 GVLHGNRTYLMEDEDGQILPTHSISAGLDYPGVGPEHAYLKDTGRAEYVAATDEEALAAFHRLCRTEGIIPALESAHALAHAFRLAPTMRSDQTIIVNLSGRGDKDIHT 390          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_THETN (Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.760e-36
Identity = 76/116 (65.52%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            GVLHG ++YLLQDE+G+I+  HSISAGLDYPGVGPEH++LK+ GRAEY   TD+EAL AF   SR EGIIPALE+AHALAY  KL   L +   +VVN SGRGDKDV T  K + V
Sbjct:  274 GVLHGMMTYLLQDEEGKILPVHSISAGLDYPGVGPEHAYLKEIGRAEYVYATDEEALAAFMDLSRTEGIIPALESAHALAYAMKLAKKLDEDKIIVVNLSGRGDKDVNTVAKVMGV 389          
The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB_RALSO2.079e-3769.72Tryptophan synthase beta chain OS=Ralstonia solana... [more]
TRPB_THIDA2.715e-3766.07Tryptophan synthase beta chain OS=Thiobacillus den... [more]
TRPB_PARDP2.715e-3765.52Tryptophan synthase beta chain OS=Paracoccus denit... [more]
TRPB_PSESY4.632e-3764.35Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_NITEU4.632e-3770.64Tryptophan synthase beta chain OS=Nitrosomonas eur... [more]
TRPB_PSEF51.032e-3665.22Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_NITMU1.032e-3663.39Tryptophan synthase beta chain OS=Nitrosospira mul... [more]
TRPB_ACIF51.032e-3666.06Tryptophan synthase beta chain OS=Acidithiobacillu... [more]
TRPB_ACIF21.032e-3666.06Tryptophan synthase beta chain OS=Acidithiobacillu... [more]
TRPB_THETN1.760e-3665.52Tryptophan synthase beta chain OS=Thermoanaerobact... [more]

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Properties
Property NameValue
Genbank descriptionC07002D05SK NTLeaf1 Citrus clementina cDNA clone C07002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bp
GGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATGGGCA
AATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGAGTTG
GACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTATAAT
GTCACAGATGATGAAGCATTGGAAGCTTTCAAGAGGTCATCACGGCTAGA
GGGTATAATCCCAGCTTTGGAGACTGCTCATGCATTGGCTTATTTGGAGA
AGCTATGCCCAACTCTTGCTGATGGTACTAAGGTTGTGGTTAACTTCAGT
GGCAGAGGTGACAAGGATGTCCAGACAGCGATCAAATATTTGCAAGTTTG
ATGGTAATGCTTGTAACCCACAATATATGATTCATTTACTGAAAACAAAT
AAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTTGTATCATTAGTTATTT
CAGAGATGTGAGAACCATCTTATGTAATTTGAGTTAAAACTTTATAAAAA
AAAAAAAAAAAA
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