CX299781

Overview
NameCX299781
Unique NameCX299781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PSEAE (Tryptophan synthase beta chain OS=Pseudomonas aeruginosa GN=trpB PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.760e-36
Identity = 74/115 (64.35%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHG  ++LLQD DGQII+ HSISAGLDYPG+GPEH++L D GR EY ++TDDEALEAF    RLEGIIPALE++HALA + K  P+L     +VVN SGRGDKD+QT + ++Q
Sbjct:  283 GVLHGNRTFLLQDADGQIIDAHSISAGLDYPGIGPEHAWLHDTGRVEYTSITDDEALEAFHTCCRLEGIIPALESSHALAEVFKRAPSLPKEHIMVVNLSGRGDKDMQTVMHHMQ 397          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_RHILO (Tryptophan synthase beta chain OS=Rhizobium loti GN=trpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 73/114 (64.04%), Postives = 89/114 (78.07%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHG  +YLLQ+ DGQI++ HSISAGLDYPGVGPEHS+L+D GR EY  + DDEALEAFK ++R+EGIIPALE+AHA+A+  K+ P +     V+VN SGRGDKDV T    L
Sbjct:  299 GVLHGNRTYLLQNADGQIMDGHSISAGLDYPGVGPEHSWLRDSGRVEYVPILDDEALEAFKLTTRVEGIIPALESAHAIAHAVKIVPAMDKDQIVIVNLSGRGDKDVHTVASML 412          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_OCHA4 (Tryptophan synthase beta chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=trpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHG  +YLLQ++DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + DDEAL+AF+  +R EGIIPALE+AHA+A   K+ PT+     ++VN SGRGDKDV T  K L
Sbjct:  289 GVLHGNRTYLLQNDDGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDDEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDQVMIVNLSGRGDKDVHTVGKLL 402          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BACHK (Tryptophan synthase beta chain OS=Bacillus thuringiensis subsp. konkukian GN=trpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 71/115 (61.74%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  281 GVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BACCZ (Tryptophan synthase beta chain OS=Bacillus cereus (strain ZK / E33L) GN=trpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 71/115 (61.74%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  281 GVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPKMKEDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BACC3 (Tryptophan synthase beta chain OS=Bacillus cereus (strain 03BB102) GN=trpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 71/115 (61.74%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  281 GVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BACAN (Tryptophan synthase beta chain OS=Bacillus anthracis GN=trpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 71/115 (61.74%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  281 GVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BACAH (Tryptophan synthase beta chain OS=Bacillus thuringiensis (strain Al Hakam) GN=trpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 71/115 (61.74%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  281 GVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BACAC (Tryptophan synthase beta chain OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=trpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 71/115 (61.74%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  281 GVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BACAA (Tryptophan synthase beta chain OS=Bacillus anthracis (strain A0248) GN=trpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 71/115 (61.74%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  281 GVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395          
The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB_PSEAE1.760e-3664.35Tryptophan synthase beta chain OS=Pseudomonas aeru... [more]
TRPB_RHILO2.299e-3664.04Tryptophan synthase beta chain OS=Rhizobium loti G... [more]
TRPB_OCHA42.299e-3663.16Tryptophan synthase beta chain OS=Ochrobactrum ant... [more]
TRPB_BACHK2.299e-3661.74Tryptophan synthase beta chain OS=Bacillus thuring... [more]
TRPB_BACCZ2.299e-3661.74Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACC32.299e-3661.74Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACAN2.299e-3661.74Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB_BACAH2.299e-3661.74Tryptophan synthase beta chain OS=Bacillus thuring... [more]
TRPB_BACAC2.299e-3661.74Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB_BACAA2.299e-3661.74Tryptophan synthase beta chain OS=Bacillus anthrac... [more]

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Properties
Property NameValue
Genbank descriptionC07002D05SK NTLeaf1 Citrus clementina cDNA clone C07002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bp
GGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATGGGCA
AATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGAGTTG
GACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTATAAT
GTCACAGATGATGAAGCATTGGAAGCTTTCAAGAGGTCATCACGGCTAGA
GGGTATAATCCCAGCTTTGGAGACTGCTCATGCATTGGCTTATTTGGAGA
AGCTATGCCCAACTCTTGCTGATGGTACTAAGGTTGTGGTTAACTTCAGT
GGCAGAGGTGACAAGGATGTCCAGACAGCGATCAAATATTTGCAAGTTTG
ATGGTAATGCTTGTAACCCACAATATATGATTCATTTACTGAAAACAAAT
AAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTTGTATCATTAGTTATTT
CAGAGATGTGAGAACCATCTTATGTAATTTGAGTTAAAACTTTATAAAAA
AAAAAAAAAAAA
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