CX299781

Overview
NameCX299781
Unique NameCX299781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_FRATF (Tryptophan synthase beta chain OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=trpB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.060e-25
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK---VVVNFSGRGDKDVQT 327
            G+  G  + L+Q+ DGQI E +SISAGLD+P VGP+H+ L   GRA+Y + TDDEAL+AFK   + EGIIPALE++HALA+  KL     D  K   +VVN SGRGDKD+ T
Sbjct:  276 GIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAIGRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKL--AYEDPNKEQLLVVNLSGRGDKDIFT 385          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_FRAT1 (Tryptophan synthase beta chain OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=trpB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.060e-25
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK---VVVNFSGRGDKDVQT 327
            G+  G  + L+Q+ DGQI E +SISAGLD+P VGP+H+ L   GRA+Y + TDDEAL+AFK   + EGIIPALE++HALA+  KL     D  K   +VVN SGRGDKD+ T
Sbjct:  276 GIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAIGRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKL--AYEDPNKEQLLVVNLSGRGDKDIFT 385          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_FRATW (Tryptophan synthase beta chain OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=trpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.002e-23
Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK---VVVNFSGRGDKDVQT 327
            G+  G  + L+Q+ DGQI E +SISAGLD+P VGP+H+ L    RA+Y + TDDEAL+AFK   + EGIIPALE++HALA+  KL     D  K   +VVN SGRGDKD+ T
Sbjct:  276 GIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAICRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKL--AYEDPNKEQLLVVNLSGRGDKDIFT 385          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BLOFL (Tryptophan synthase beta chain OS=Blochmannia floridanus GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23
Identity = 54/110 (49.09%), Postives = 76/110 (69.09%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKV-VVNFSGRGDKDVQT 327
            G+  G  S +LQ ++GQI   +SI+AGLD+P VGPEH++LK   R +Y ++ D+EA+ AF+  S  EGIIPALE+AHALA+  K+        ++ +VN SGRGDKD+ T
Sbjct:  277 GIYFGMKSPILQSQEGQIKNSYSIAAGLDFPSVGPEHAYLKKINRVKYVSINDEEAINAFQELSLYEGIIPALESAHALAHALKIIRKTPKKKQILIVNLSGRGDKDIIT 386          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BUCAI (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trpB PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 6.077e-21
Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKL 255
            G+  G  S+L+Q++ GQI E  SISAGLD+P VGPEH++L    RA+Y ++TD+EA+ AF+  SR EGIIPALE++HALAY  KL
Sbjct:  275 GIYFGMKSHLMQNKQGQIQESWSISAGLDFPSVGPEHAWLNSINRAKYVSITDEEAISAFQVLSRKEGIIPALESSHALAYALKL 359          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRP (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum padi GN=trpB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.039e-12
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSR 195
            G+  G  S+L+Q ++GQI +  S+SAGLD+P VGPEHS+L    RA+Y +VTD EALEAF+  S+
Sbjct:  160 GIYFGMKSHLMQSQEGQIEKSWSVSAGLDFPSVGPEHSWLNSINRAKYVSVTDIEALEAFQILSK 224          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRM (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum maidis GN=trpB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.157e-12
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSR 195
            G+  G  S L+Q+++GQI +  SISAGLD+P VGPEH++L    RA+Y ++TD EALEAF+  S+
Sbjct:  160 GIYFGMKSSLMQNQEGQIEKSWSISAGLDFPSVGPEHAWLHSINRAQYVSITDIEALEAFQILSK 224          
The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB_FRATF9.060e-2555.36Tryptophan synthase beta chain OS=Francisella tula... [more]
TRPB_FRAT19.060e-2555.36Tryptophan synthase beta chain OS=Francisella tula... [more]
TRPB_FRATW1.002e-2354.46Tryptophan synthase beta chain OS=Francisella tula... [more]
TRPB_BLOFL2.232e-2349.09Tryptophan synthase beta chain OS=Blochmannia flor... [more]
TRPB_BUCAI6.077e-2157.65Tryptophan synthase beta chain OS=Buchnera aphidic... [more]
TRPB_BUCRP1.039e-1253.85Tryptophan synthase beta chain (Fragment) OS=Buchn... [more]
TRPB_BUCRM5.157e-1252.31Tryptophan synthase beta chain (Fragment) OS=Buchn... [more]

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Properties
Property NameValue
Genbank descriptionC07002D05SK NTLeaf1 Citrus clementina cDNA clone C07002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bp
GGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATGGGCA
AATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGAGTTG
GACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTATAAT
GTCACAGATGATGAAGCATTGGAAGCTTTCAAGAGGTCATCACGGCTAGA
GGGTATAATCCCAGCTTTGGAGACTGCTCATGCATTGGCTTATTTGGAGA
AGCTATGCCCAACTCTTGCTGATGGTACTAAGGTTGTGGTTAACTTCAGT
GGCAGAGGTGACAAGGATGTCCAGACAGCGATCAAATATTTGCAAGTTTG
ATGGTAATGCTTGTAACCCACAATATATGATTCATTTACTGAAAACAAAT
AAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTTGTATCATTAGTTATTT
CAGAGATGTGAGAACCATCTTATGTAATTTGAGTTAAAACTTTATAAAAA
AAAAAAAAAAAA
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