CX299781
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_FRATF (Tryptophan synthase beta chain OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=trpB PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 9.060e-25 Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK---VVVNFSGRGDKDVQT 327 G+ G + L+Q+ DGQI E +SISAGLD+P VGP+H+ L GRA+Y + TDDEAL+AFK + EGIIPALE++HALA+ KL D K +VVN SGRGDKD+ T Sbjct: 276 GIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAIGRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKL--AYEDPNKEQLLVVNLSGRGDKDIFT 385
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_FRAT1 (Tryptophan synthase beta chain OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=trpB PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 9.060e-25 Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK---VVVNFSGRGDKDVQT 327 G+ G + L+Q+ DGQI E +SISAGLD+P VGP+H+ L GRA+Y + TDDEAL+AFK + EGIIPALE++HALA+ KL D K +VVN SGRGDKD+ T Sbjct: 276 GIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAIGRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKL--AYEDPNKEQLLVVNLSGRGDKDIFT 385
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_FRATW (Tryptophan synthase beta chain OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=trpB PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.002e-23 Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK---VVVNFSGRGDKDVQT 327 G+ G + L+Q+ DGQI E +SISAGLD+P VGP+H+ L RA+Y + TDDEAL+AFK + EGIIPALE++HALA+ KL D K +VVN SGRGDKD+ T Sbjct: 276 GIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAICRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKL--AYEDPNKEQLLVVNLSGRGDKDIFT 385
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BLOFL (Tryptophan synthase beta chain OS=Blochmannia floridanus GN=trpB PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23 Identity = 54/110 (49.09%), Postives = 76/110 (69.09%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKV-VVNFSGRGDKDVQT 327 G+ G S +LQ ++GQI +SI+AGLD+P VGPEH++LK R +Y ++ D+EA+ AF+ S EGIIPALE+AHALA+ K+ ++ +VN SGRGDKD+ T Sbjct: 277 GIYFGMKSPILQSQEGQIKNSYSIAAGLDFPSVGPEHAYLKKINRVKYVSINDEEAINAFQELSLYEGIIPALESAHALAHALKIIRKTPKKKQILIVNLSGRGDKDIIT 386
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BUCAI (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trpB PE=3 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 6.077e-21 Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKL 255 G+ G S+L+Q++ GQI E SISAGLD+P VGPEH++L RA+Y ++TD+EA+ AF+ SR EGIIPALE++HALAY KL Sbjct: 275 GIYFGMKSHLMQNKQGQIQESWSISAGLDFPSVGPEHAWLNSINRAKYVSITDEEAISAFQVLSRKEGIIPALESSHALAYALKL 359
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRP (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum padi GN=trpB PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.039e-12 Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSR 195 G+ G S+L+Q ++GQI + S+SAGLD+P VGPEHS+L RA+Y +VTD EALEAF+ S+ Sbjct: 160 GIYFGMKSHLMQSQEGQIEKSWSVSAGLDFPSVGPEHSWLNSINRAKYVSVTDIEALEAFQILSK 224
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRM (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum maidis GN=trpB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 5.157e-12 Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSR 195 G+ G S L+Q+++GQI + SISAGLD+P VGPEH++L RA+Y ++TD EALEAF+ S+ Sbjct: 160 GIYFGMKSSLMQNQEGQIEKSWSISAGLDFPSVGPEHAWLHSINRAQYVSITDIEALEAFQILSK 224 The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 427
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bpback to top |