CX299781

Overview
NameCX299781
Unique NameCX299781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BRUAB (Tryptophan synthase beta chain OS=Brucella abortus GN=trpB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.946e-35
Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+AF+  +R EGIIPALE+AHA+A   K+ PT+     ++VN SGRGDKDV T  K L
Sbjct:  289 GVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA2 (Tryptophan synthase beta chain OS=Brucella abortus (strain 2308) GN=trpB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.946e-35
Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+AF+  +R EGIIPALE+AHA+A   K+ PT+     ++VN SGRGDKDV T  K L
Sbjct:  289 GVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA1 (Tryptophan synthase beta chain OS=Brucella abortus (strain S19) GN=trpB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.946e-35
Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+AF+  +R EGIIPALE+AHA+A   K+ PT+     ++VN SGRGDKDV T  K L
Sbjct:  289 GVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_MYCTU (Tryptophan synthase beta chain OS=Mycobacterium tuberculosis GN=trpB PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.542e-35
Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 339
            G  HG+ SYLLQDEDGQ IE HSISAGLDYPGVGPEH++LK+ GR +Y  +TD EA++AF    R+EGIIPA+E+AHA+A   KL   L  G  +VVN SGRGDKDV+TA K+
Sbjct:  303 GAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVELGRGAVIVVNLSGRGDKDVETAAKW 415          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_MYCBO (Tryptophan synthase beta chain OS=Mycobacterium bovis GN=trpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.542e-35
Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 339
            G  HG+ SYLLQDEDGQ IE HSISAGLDYPGVGPEH++LK+ GR +Y  +TD EA++AF    R+EGIIPA+E+AHA+A   KL   L  G  +VVN SGRGDKDV+TA K+
Sbjct:  303 GAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVELGRGAVIVVNLSGRGDKDVETAAKW 415          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ALKMQ (Tryptophan synthase beta chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.542e-35
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GV+HG ++YLLQDE GQI   HSISAGLDYPG+GPEH++    GRA Y  +TD+EALEAF+  +RLEGIIPALE+AHA+AYL KL P       +V+N SGRGDKD+ T  K L
Sbjct:  280 GVIHGMMTYLLQDEQGQITPVHSISAGLDYPGIGPEHAYYHHTGRANYVAITDEEALEAFQLLTRLEGIIPALESAHAIAYLMKLAPKTKGDDIIVLNLSGRGDKDIHTISKLL 393          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_POLNA (Tryptophan synthase beta chain OS=Polaromonas naphthalenivorans (strain CJ2) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.319e-35
Identity = 70/109 (64.22%), Postives = 85/109 (77.98%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327
            GVLHG  +Y+LQ++DGQ+ E HSISAGLDYPGVGPEH++LKD GRAEY  +TD EAL+AF    R EGIIPALE+AHA+AY  KL  T+     ++VN SGRGDKD+ T
Sbjct:  283 GVLHGNRTYVLQNDDGQVTETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDTEALQAFHYLCRTEGIIPALESAHAVAYAMKLAKTMRSDQSILVNLSGRGDKDIGT 391          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_GLOVI (Tryptophan synthase beta chain OS=Gloeobacter violaceus GN=trpB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.319e-35
Identity = 75/112 (66.96%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336
            GVLHGA+SY+LQDE GQ+ E HS+SAGLDYPGVGPEHS+LKD GRAEYY+VTD EAL A       EGIIPALETAHA AYL  L   L     VV+N SGRGDKD+ T  +
Sbjct:  295 GVLHGAMSYVLQDEQGQVQEAHSLSAGLDYPGVGPEHSYLKDIGRAEYYSVTDSEALAALSLVCSTEGIIPALETAHAFAYLGILASQLHSEQIVVLNCSGRGDKDMGTVAR 406          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRKO (Tryptophan synthase beta chain 1 OS=Pyrococcus kodakaraensis GN=trpB1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.319e-35
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 321
            GV HG LSY LQ+E+GQI   HS+SAGLDYPGVGPEH++LKD GRAEY  VTD+EAL AF   SR EGI+PALE+AHA+AY  K+ P +     ++VN SGRGDKD+
Sbjct:  274 GVFHGMLSYFLQNEEGQITPTHSVSAGLDYPGVGPEHAYLKDSGRAEYVTVTDEEALRAFHELSRTEGILPALESAHAVAYAMKIAPEMDKDEIIIVNLSGRGDKDL 380          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_THET8 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.335e-35
Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHG+  YLL D DGQI   HS+SAGLDYPGVGPEHS+  D G AEY +VTD+EALE FK  +RLEGIIPALE+AHA+AY  K+ P +     VV+N SGRGDKDV   ++ L
Sbjct:  301 GVLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEMDKDQVVVINLSGRGDKDVTEVMRLL 414          
The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB_BRUAB1.946e-3562.28Tryptophan synthase beta chain OS=Brucella abortus... [more]
TRPB_BRUA21.946e-3562.28Tryptophan synthase beta chain OS=Brucella abortus... [more]
TRPB_BRUA11.946e-3562.28Tryptophan synthase beta chain OS=Brucella abortus... [more]
TRPB_MYCTU2.542e-3563.72Tryptophan synthase beta chain OS=Mycobacterium tu... [more]
TRPB_MYCBO2.542e-3563.72Tryptophan synthase beta chain OS=Mycobacterium bo... [more]
TRPB_ALKMQ2.542e-3562.28Tryptophan synthase beta chain OS=Alkaliphilus met... [more]
TRPB_POLNA3.319e-3564.22Tryptophan synthase beta chain OS=Polaromonas naph... [more]
TRPB_GLOVI3.319e-3566.96Tryptophan synthase beta chain OS=Gloeobacter viol... [more]
TRPB1_PYRKO3.319e-3564.49Tryptophan synthase beta chain 1 OS=Pyrococcus kod... [more]
TRPB_THET84.335e-3563.16Tryptophan synthase beta chain OS=Thermus thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC07002D05SK NTLeaf1 Citrus clementina cDNA clone C07002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bp
GGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATGGGCA
AATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGAGTTG
GACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTATAAT
GTCACAGATGATGAAGCATTGGAAGCTTTCAAGAGGTCATCACGGCTAGA
GGGTATAATCCCAGCTTTGGAGACTGCTCATGCATTGGCTTATTTGGAGA
AGCTATGCCCAACTCTTGCTGATGGTACTAAGGTTGTGGTTAACTTCAGT
GGCAGAGGTGACAAGGATGTCCAGACAGCGATCAAATATTTGCAAGTTTG
ATGGTAATGCTTGTAACCCACAATATATGATTCATTTACTGAAAACAAAT
AAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTTGTATCATTAGTTATTT
CAGAGATGTGAGAACCATCTTATGTAATTTGAGTTAAAACTTTATAAAAA
AAAAAAAAAAAA
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