CX299781
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BRUAB (Tryptophan synthase beta chain OS=Brucella abortus GN=trpB PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.946e-35 Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHG +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y + D+EAL+AF+ +R EGIIPALE+AHA+A K+ PT+ ++VN SGRGDKDV T K L Sbjct: 289 GVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA2 (Tryptophan synthase beta chain OS=Brucella abortus (strain 2308) GN=trpB PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.946e-35 Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHG +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y + D+EAL+AF+ +R EGIIPALE+AHA+A K+ PT+ ++VN SGRGDKDV T K L Sbjct: 289 GVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA1 (Tryptophan synthase beta chain OS=Brucella abortus (strain S19) GN=trpB PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.946e-35 Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHG +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y + D+EAL+AF+ +R EGIIPALE+AHA+A K+ PT+ ++VN SGRGDKDV T K L Sbjct: 289 GVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_MYCTU (Tryptophan synthase beta chain OS=Mycobacterium tuberculosis GN=trpB PE=1 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 2.542e-35 Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 339 G HG+ SYLLQDEDGQ IE HSISAGLDYPGVGPEH++LK+ GR +Y +TD EA++AF R+EGIIPA+E+AHA+A KL L G +VVN SGRGDKDV+TA K+ Sbjct: 303 GAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVELGRGAVIVVNLSGRGDKDVETAAKW 415
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_MYCBO (Tryptophan synthase beta chain OS=Mycobacterium bovis GN=trpB PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 2.542e-35 Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 339 G HG+ SYLLQDEDGQ IE HSISAGLDYPGVGPEH++LK+ GR +Y +TD EA++AF R+EGIIPA+E+AHA+A KL L G +VVN SGRGDKDV+TA K+ Sbjct: 303 GAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVELGRGAVIVVNLSGRGDKDVETAAKW 415
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ALKMQ (Tryptophan synthase beta chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=trpB PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 2.542e-35 Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GV+HG ++YLLQDE GQI HSISAGLDYPG+GPEH++ GRA Y +TD+EALEAF+ +RLEGIIPALE+AHA+AYL KL P +V+N SGRGDKD+ T K L Sbjct: 280 GVIHGMMTYLLQDEQGQITPVHSISAGLDYPGIGPEHAYYHHTGRANYVAITDEEALEAFQLLTRLEGIIPALESAHAIAYLMKLAPKTKGDDIIVLNLSGRGDKDIHTISKLL 393
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_POLNA (Tryptophan synthase beta chain OS=Polaromonas naphthalenivorans (strain CJ2) GN=trpB PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.319e-35 Identity = 70/109 (64.22%), Postives = 85/109 (77.98%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327 GVLHG +Y+LQ++DGQ+ E HSISAGLDYPGVGPEH++LKD GRAEY +TD EAL+AF R EGIIPALE+AHA+AY KL T+ ++VN SGRGDKD+ T Sbjct: 283 GVLHGNRTYVLQNDDGQVTETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDTEALQAFHYLCRTEGIIPALESAHAVAYAMKLAKTMRSDQSILVNLSGRGDKDIGT 391
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_GLOVI (Tryptophan synthase beta chain OS=Gloeobacter violaceus GN=trpB PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.319e-35 Identity = 75/112 (66.96%), Postives = 84/112 (75.00%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336 GVLHGA+SY+LQDE GQ+ E HS+SAGLDYPGVGPEHS+LKD GRAEYY+VTD EAL A EGIIPALETAHA AYL L L VV+N SGRGDKD+ T + Sbjct: 295 GVLHGAMSYVLQDEQGQVQEAHSLSAGLDYPGVGPEHSYLKDIGRAEYYSVTDSEALAALSLVCSTEGIIPALETAHAFAYLGILASQLHSEQIVVLNCSGRGDKDMGTVAR 406
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRKO (Tryptophan synthase beta chain 1 OS=Pyrococcus kodakaraensis GN=trpB1 PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.319e-35 Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 321 GV HG LSY LQ+E+GQI HS+SAGLDYPGVGPEH++LKD GRAEY VTD+EAL AF SR EGI+PALE+AHA+AY K+ P + ++VN SGRGDKD+ Sbjct: 274 GVFHGMLSYFLQNEEGQITPTHSVSAGLDYPGVGPEHAYLKDSGRAEYVTVTDEEALRAFHELSRTEGILPALESAHAVAYAMKIAPEMDKDEIIIVNLSGRGDKDL 380
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_THET8 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpB PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 4.335e-35 Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHG+ YLL D DGQI HS+SAGLDYPGVGPEHS+ D G AEY +VTD+EALE FK +RLEGIIPALE+AHA+AY K+ P + VV+N SGRGDKDV ++ L Sbjct: 301 GVLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEMDKDQVVVINLSGRGDKDVTEVMRLL 414 The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 427
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bpback to top |