CX299781

Overview
NameCX299781
Unique NameCX299781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_POLSJ (Tryptophan synthase beta chain OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=trpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327
            GVLHG  +Y+LQ++DGQ+ E HSISAGLDYPGVGPEH+FLKD GRAEY  +TD EALEAF    R EGII ALE++HA+AY  KL  T+     ++VN SGRGDKD+ T
Sbjct:  283 GVLHGNRTYVLQNDDGQVTETHSISAGLDYPGVGPEHAFLKDIGRAEYVGITDTEALEAFHYLCRTEGIIAALESSHAVAYAMKLAKTMRSDQSILVNLSGRGDKDIGT 391          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_MYCLE (Tryptophan synthase beta chain OS=Mycobacterium leprae GN=trpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34
Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 339
            G   G  SYLLQDEDGQ IE HSI+AGLDYPGVGPEH++L++ GRAEY  +TD EA+EAF+   R EGI+PALE+AHA+A   KL   +  G  +VVN SGRGDKD++ A K+
Sbjct:  298 GAFQGTFSYLLQDEDGQTIESHSIAAGLDYPGVGPEHAWLRETGRAEYQPITDSEAIEAFRLLCRTEGILPALESAHAVAGALKLASEIGKGAVIVVNLSGRGDKDIEAAAKW 410          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BORPD (Tryptophan synthase beta chain OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=trpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34
Identity = 67/109 (61.47%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327
            GVLHG  +Y++Q+ DGQ+ E HS+SAGLDYPGVGPEH++LKD GRA+Y  +TDDEAL AF    R+EGI+PALE++HA+A   K+ PTL   T ++VN SGRGDKD+ T
Sbjct:  282 GVLHGNRTYVMQNADGQVQETHSVSAGLDYPGVGPEHAWLKDSGRAQYVGITDDEALAAFHDCCRIEGIMPALESSHAIAQAVKMAPTLPKDTIILVNLSGRGDKDMHT 390          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRAB (Tryptophan synthase beta chain 1 OS=Pyrococcus abyssi GN=trpB1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34
Identity = 70/112 (62.50%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336
            GV HG LSY LQDE+GQI   HSI+ GLDYPGVGPEH++LK+ GRAEY  VTD+EAL AF   SR EGIIPALE+AHA+AY  KL   ++    ++VN SGRGDKD+   +K
Sbjct:  272 GVFHGMLSYFLQDEEGQIRTTHSIAPGLDYPGVGPEHAYLKESGRAEYVTVTDEEALRAFHELSRTEGIIPALESAHAVAYAIKLAREMSRDDVIIVNLSGRGDKDLDIVLK 383          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB1_ARCFU (Tryptophan synthase beta chain 1 OS=Archaeoglobus fulgidus GN=trpB1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34
Identity = 68/107 (63.55%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 321
            GVLHG LSY LQDE+G +++ HS+SAGLDYPGVGPEH++LK+ GR EY  V D+EAL AFK  S+LEGIIPALE+AHA+AY  K+   +     +VVN SGRGDKD+
Sbjct:  283 GVLHGMLSYFLQDEEGMMLDTHSVSAGLDYPGVGPEHAYLKETGRCEYVTVNDEEALRAFKTLSKLEGIIPALESAHAIAYAMKMAEEMQRDDVLVVNLSGRGDKDM 389          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_RUTMC (Tryptophan synthase beta chain OS=Ruthia magnifica subsp. Calyptogena magnifica GN=trpB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.647e-34
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327
            GVLHG  +YL++DE+GQIIE HSISAGLDYPGVGPEH++LKD GRA Y  +TD EALEAF   +++EGI+PALE++HA+AY  KL   L     +++N SGRGDKD+ T
Sbjct:  284 GVLHGNRTYLMEDENGQIIEGHSISAGLDYPGVGPEHAYLKDSGRARYVAITDKEALEAFHVLTKVEGILPALESSHAVAYGIKLAKELGKDKHIIINLSGRGDKDIHT 392          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.647e-34
Identity = 68/115 (59.13%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            G++HG ++Y+LQDEDGQI   +S+SAGLDYPGVGP+HS+LK++ RA Y  VTD EAL+AF   S  EGIIPALE++HA+AY  KL P+L+    V++N SGRGDKDV T +K ++
Sbjct:  274 GIIHGMMTYVLQDEDGQITPAYSVSAGLDYPGVGPQHSYLKEKERASYEAVTDKEALKAFLYLSEKEGIIPALESSHAVAYAMKLAPSLSKDEIVIINLSGRGDKDVNTVMKNME 388          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ACICA (Tryptophan synthase beta chain OS=Acinetobacter calcoaceticus GN=trpB PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.647e-34
Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336
            GVLHG  +YL+ D  GQIIE HSISAGLDYPGVGPEHSFLKD  R EY  + D+EAL+ F+  +R+EGIIPA+E+AHA+AY+ KL PT+     ++ N SGRGDKD+ T  +
Sbjct:  283 GVLHGNRTYLMSDPQGQIIETHSISAGLDYPGVGPEHSFLKDMHRVEYVPIDDNEALQGFRDLTRIEGIIPAIESAHAMAYVTKLAPTMDKDQIIIANVSGRGDKDLMTVAR 394          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ACIAD (Tryptophan synthase beta chain OS=Acinetobacter sp. (strain ADP1) GN=trpB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.647e-34
Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336
            GVLHG  +YL+ D  GQIIE HSISAGLDYPGVGPEHSFLKD  R EY  + D+EAL+ F+  +R+EGIIPA+E+AHA+AY+ KL PT+     ++ N SGRGDKD+ T  +
Sbjct:  283 GVLHGNRTYLMSDPQGQIIETHSISAGLDYPGVGPEHSFLKDMHRVEYVPIDDNEALQGFRDLTRIEGIIPAIESAHAMAYVTKLAPTMDKDQIIIANVSGRGDKDLMTVAR 394          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_STRGG (Tryptophan synthase beta chain OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=trpB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.152e-34
Identity = 70/113 (61.95%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 339
            G+LHG+ SY+LQD++GQI EP+SISAGLDYPG+GPEHS+LKD GR EY  VTDD A++A +  SR EGIIPA+E+AHALA    L   L     ++VN SGRGDKD+ TA +Y
Sbjct:  290 GILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHSYLKDVGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALDLGKELGKDGLILVNLSGRGDKDMDTAARY 402          
The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB_POLSJ1.261e-3464.22Tryptophan synthase beta chain OS=Polaromonas sp. ... [more]
TRPB_MYCLE1.261e-3461.06Tryptophan synthase beta chain OS=Mycobacterium le... [more]
TRPB_BORPD1.261e-3461.47Tryptophan synthase beta chain OS=Bordetella petri... [more]
TRPB1_PYRAB1.261e-3462.50Tryptophan synthase beta chain 1 OS=Pyrococcus aby... [more]
TRPB1_ARCFU1.261e-3463.55Tryptophan synthase beta chain 1 OS=Archaeoglobus ... [more]
TRPB_RUTMC1.647e-3462.39Tryptophan synthase beta chain OS=Ruthia magnifica... [more]
TRPB_CLOAB1.647e-3459.13Tryptophan synthase beta chain OS=Clostridium acet... [more]
TRPB_ACICA1.647e-3460.71Tryptophan synthase beta chain OS=Acinetobacter ca... [more]
TRPB_ACIAD1.647e-3460.71Tryptophan synthase beta chain OS=Acinetobacter sp... [more]
TRPB_STRGG2.152e-3461.95Tryptophan synthase beta chain OS=Streptomyces gri... [more]

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Properties
Property NameValue
Genbank descriptionC07002D05SK NTLeaf1 Citrus clementina cDNA clone C07002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bp
GGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATGGGCA
AATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGAGTTG
GACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTATAAT
GTCACAGATGATGAAGCATTGGAAGCTTTCAAGAGGTCATCACGGCTAGA
GGGTATAATCCCAGCTTTGGAGACTGCTCATGCATTGGCTTATTTGGAGA
AGCTATGCCCAACTCTTGCTGATGGTACTAAGGTTGTGGTTAACTTCAGT
GGCAGAGGTGACAAGGATGTCCAGACAGCGATCAAATATTTGCAAGTTTG
ATGGTAATGCTTGTAACCCACAATATATGATTCATTTACTGAAAACAAAT
AAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTTGTATCATTAGTTATTT
CAGAGATGTGAGAACCATCTTATGTAATTTGAGTTAAAACTTTATAAAAA
AAAAAAAAAAAA
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