CX299781
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_POLSJ (Tryptophan synthase beta chain OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=trpB PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34 Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327 GVLHG +Y+LQ++DGQ+ E HSISAGLDYPGVGPEH+FLKD GRAEY +TD EALEAF R EGII ALE++HA+AY KL T+ ++VN SGRGDKD+ T Sbjct: 283 GVLHGNRTYVLQNDDGQVTETHSISAGLDYPGVGPEHAFLKDIGRAEYVGITDTEALEAFHYLCRTEGIIAALESSHAVAYAMKLAKTMRSDQSILVNLSGRGDKDIGT 391
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_MYCLE (Tryptophan synthase beta chain OS=Mycobacterium leprae GN=trpB PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34 Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 339 G G SYLLQDEDGQ IE HSI+AGLDYPGVGPEH++L++ GRAEY +TD EA+EAF+ R EGI+PALE+AHA+A KL + G +VVN SGRGDKD++ A K+ Sbjct: 298 GAFQGTFSYLLQDEDGQTIESHSIAAGLDYPGVGPEHAWLRETGRAEYQPITDSEAIEAFRLLCRTEGILPALESAHAVAGALKLASEIGKGAVIVVNLSGRGDKDIEAAAKW 410
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_BORPD (Tryptophan synthase beta chain OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=trpB PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34 Identity = 67/109 (61.47%), Postives = 86/109 (78.90%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327 GVLHG +Y++Q+ DGQ+ E HS+SAGLDYPGVGPEH++LKD GRA+Y +TDDEAL AF R+EGI+PALE++HA+A K+ PTL T ++VN SGRGDKD+ T Sbjct: 282 GVLHGNRTYVMQNADGQVQETHSVSAGLDYPGVGPEHAWLKDSGRAQYVGITDDEALAAFHDCCRIEGIMPALESSHAIAQAVKMAPTLPKDTIILVNLSGRGDKDMHT 390
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRAB (Tryptophan synthase beta chain 1 OS=Pyrococcus abyssi GN=trpB1 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34 Identity = 70/112 (62.50%), Postives = 84/112 (75.00%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336 GV HG LSY LQDE+GQI HSI+ GLDYPGVGPEH++LK+ GRAEY VTD+EAL AF SR EGIIPALE+AHA+AY KL ++ ++VN SGRGDKD+ +K Sbjct: 272 GVFHGMLSYFLQDEEGQIRTTHSIAPGLDYPGVGPEHAYLKESGRAEYVTVTDEEALRAFHELSRTEGIIPALESAHAVAYAIKLAREMSRDDVIIVNLSGRGDKDLDIVLK 383
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB1_ARCFU (Tryptophan synthase beta chain 1 OS=Archaeoglobus fulgidus GN=trpB1 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34 Identity = 68/107 (63.55%), Postives = 84/107 (78.50%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 321 GVLHG LSY LQDE+G +++ HS+SAGLDYPGVGPEH++LK+ GR EY V D+EAL AFK S+LEGIIPALE+AHA+AY K+ + +VVN SGRGDKD+ Sbjct: 283 GVLHGMLSYFLQDEEGMMLDTHSVSAGLDYPGVGPEHAYLKETGRCEYVTVNDEEALRAFKTLSKLEGIIPALESAHAIAYAMKMAEEMQRDDVLVVNLSGRGDKDM 389
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_RUTMC (Tryptophan synthase beta chain OS=Ruthia magnifica subsp. Calyptogena magnifica GN=trpB PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.647e-34 Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327 GVLHG +YL++DE+GQIIE HSISAGLDYPGVGPEH++LKD GRA Y +TD EALEAF +++EGI+PALE++HA+AY KL L +++N SGRGDKD+ T Sbjct: 284 GVLHGNRTYLMEDENGQIIEGHSISAGLDYPGVGPEHAYLKDSGRARYVAITDKEALEAFHVLTKVEGILPALESSHAVAYGIKLAKELGKDKHIIINLSGRGDKDIHT 392
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.647e-34 Identity = 68/115 (59.13%), Postives = 90/115 (78.26%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345 G++HG ++Y+LQDEDGQI +S+SAGLDYPGVGP+HS+LK++ RA Y VTD EAL+AF S EGIIPALE++HA+AY KL P+L+ V++N SGRGDKDV T +K ++ Sbjct: 274 GIIHGMMTYVLQDEDGQITPAYSVSAGLDYPGVGPQHSYLKEKERASYEAVTDKEALKAFLYLSEKEGIIPALESSHAVAYAMKLAPSLSKDEIVIINLSGRGDKDVNTVMKNME 388
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ACICA (Tryptophan synthase beta chain OS=Acinetobacter calcoaceticus GN=trpB PE=3 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 1.647e-34 Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336 GVLHG +YL+ D GQIIE HSISAGLDYPGVGPEHSFLKD R EY + D+EAL+ F+ +R+EGIIPA+E+AHA+AY+ KL PT+ ++ N SGRGDKD+ T + Sbjct: 283 GVLHGNRTYLMSDPQGQIIETHSISAGLDYPGVGPEHSFLKDMHRVEYVPIDDNEALQGFRDLTRIEGIIPAIESAHAMAYVTKLAPTMDKDQIIIANVSGRGDKDLMTVAR 394
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ACIAD (Tryptophan synthase beta chain OS=Acinetobacter sp. (strain ADP1) GN=trpB PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.647e-34 Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336 GVLHG +YL+ D GQIIE HSISAGLDYPGVGPEHSFLKD R EY + D+EAL+ F+ +R+EGIIPA+E+AHA+AY+ KL PT+ ++ N SGRGDKD+ T + Sbjct: 283 GVLHGNRTYLMSDPQGQIIETHSISAGLDYPGVGPEHSFLKDMHRVEYVPIDDNEALQGFRDLTRIEGIIPAIESAHAMAYVTKLAPTMDKDQIIIANVSGRGDKDLMTVAR 394
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_STRGG (Tryptophan synthase beta chain OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=trpB PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.152e-34 Identity = 70/113 (61.95%), Postives = 87/113 (76.99%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 339 G+LHG+ SY+LQD++GQI EP+SISAGLDYPG+GPEHS+LKD GR EY VTDD A++A + SR EGIIPA+E+AHALA L L ++VN SGRGDKD+ TA +Y Sbjct: 290 GILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHSYLKDVGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALDLGKELGKDGLILVNLSGRGDKDMDTAARY 402 The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 427
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bpback to top |