CX299786

Overview
NameCX299786
Unique NameCX299786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299786 vs. ExPASy Swiss-Prot
Match: SAHH_METJA (Adenosylhomocysteinase OS=Methanocaldococcus jannaschii GN=ahcY PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 49/139 (35.25%), Postives = 64/139 (46.04%), Query Frame = 3
Query:    9 KMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTG*Y*KKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADG 425
            KM+N AI+ N GHFDNEI+   LE      +      T+   +   N  I +L EGRL+NL CA GHP  VM  SF NQ +A   + K         +VY +P   D  +              LTKEQ  Y+    +G
Sbjct:  281 KMRNGAILANAGHFDNEINKKHLEELAKSIKEVRNCVTE---YDLGNKKIYLLGEGRLVNLACADGHPCEVMDMSFANQALAAEYILKNHEK--LEPRVYNIPYEQDLMIASLKLKAMGIEIDELTKEQKKYLEDWREG 414          
BLAST of CX299786 vs. ExPASy Swiss-Prot
Match: SAHH_THEMA (Adenosylhomocysteinase OS=Thermotoga maritima GN=ahcY PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 3
Query:   12 MKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTG*Y*KKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYI 407
            +K+ A++ N GHF+ EI V  LE    V++   +P    +   E    + +LAEGRL+NL    GHP  +M  SF  Q+ A L L +         KVY+LP  +DE+V              LT++Q  Y+
Sbjct:  273 LKDGAVLANAGHFNVEIPVRVLEEI-AVEKFEARPNVTGYTL-ENGKTVFLLAEGRLVNLAAGDGHPVEIMDLSFALQIFAVLYLLENHRK--MSPKVYMLPDEIDERVARMKLDSLGVKIDELTEKQRRYL 400          
BLAST of CX299786 vs. ExPASy Swiss-Prot
Match: SAHH_PYRKO (Adenosylhomocysteinase OS=Pyrococcus kodakaraensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 3
Query:   12 MKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTG*Y*KKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYI 407
            MK+ AI+ N GHFD EI    LE    V+    +P    +   +    + +LAEGRL+NL  A GHP+ +M  SF  Q  A+   + +++ G    KVYVLP+ +DE V              LT+EQ  Y+
Sbjct:  287 MKDGAILANAGHFDVEISKPDLEAL-AVEISEPRPNITEYKMADGRR-LYLLAEGRLVNLAAADGHPAEIMDMSFALQ--AKAAEYIKENRGRLEPKVYVLPREIDEMVARIKLASMGIKIEELTEEQKKYL 414          
BLAST of CX299786 vs. ExPASy Swiss-Prot
Match: SAHH_METMP (Adenosylhomocysteinase OS=Methanococcus maripaludis GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 48/141 (34.04%), Postives = 69/141 (48.94%), Query Frame = 3
Query:   12 MKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSG---IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTG*Y*KKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADG 425
            MK+ A++ N GHFDNEI+   L      K ++   +  R+   E + G   I +L EGRL+NL CA GHP  VM  SF NQ ++   + + K  G    +VY +P   D K+              L+ EQ  Y+S   +G
Sbjct:  282 MKDGAVLSNAGHFDNEINKNDL------KELSKSVKEARFNIEEYDLGNKKIYLLGEGRLVNLACADGHPCEVMDMSFANQALSAKFIKENK--GKLENEVYEIPYEQDFKIALLKLHSMGADIDELSPEQRKYLSDWKEG 414          
The following BLAST results are available for this feature:
BLAST of CX299786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
SAHH_METJA4.448e-1235.25Adenosylhomocysteinase OS=Methanocaldococcus janna... [more]
SAHH_THEMA2.883e-1133.33Adenosylhomocysteinase OS=Thermotoga maritima GN=a... [more]
SAHH_PYRKO2.883e-1135.61Adenosylhomocysteinase OS=Pyrococcus kodakaraensis... [more]
SAHH_METMP2.883e-1134.04Adenosylhomocysteinase OS=Methanococcus maripaludi... [more]

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Properties
Property NameValue
Genbank descriptionC07002D10SK NTLeaf1 Citrus clementina cDNA clone C07002D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299786 ID=CX299786; Name=CX299786; organism=Citrus clementina; type=EST; length=541bp
ACATGAAGAAGATGAAGAACAATGCAATTGTTTGCAACATTGGTCACTTT
GATAATGAAATTGATGTGCTCGGTCTTGAGACCTACCCGGGTGTTAAGCG
CATTACCATCAAGCCCCAAACTGATAGGTGGGTCTTCCCCGAGACCAACT
CAGGCATCATCGTGTTGGCTGAGGGACGTCTCATGAACTTGGGATGTGCC
ACTGGGCACCCCAGCTTTGTGATGTCCTGTTCCTTCACCAATCAGGTGAT
TGCCCAGCTTGAGCTCTGGAAGGAGAAGAGCACCGGCTAGTACTAGAAGA
AGGTGTATGTTCTGCCCAAGCACCTCGATGAGAAGGTTGCTGCTCTTCAC
CTTGGCAAACTTGGAGCTAAGCTCACCAGGCTCACCAAGGAGCAGGCTGA
CTACATCAGTGTGTCCGCCGATGGTCCTTACAAGCCTCTTCACTACAGGT
ACTAAGTGGAAGAAGAAGAAGAAGAATAGTGAATGTTTTGAGGGAAAGAA
ACAAAATATTTGGCCGGCTTGATTGTTTTCAATGATGATCT
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