CX299821

Overview
NameCX299821
Unique NameCX299821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_SARCR (Proliferating cell nuclear antigen OS=Sarcophaga crassipalpis GN=PCNA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.987e-28
Identity = 58/92 (63.04%), Postives = 77/92 (83.70%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 300
            KFS  GD+G+AN+ L Q ++VDK EEA IIEM EPV+LTFA RY+N+FT+ATPLS  V +S+ +++P+VVEY I E+G+IR+YLAPKIE+DE
Sbjct:  168 KFSASGDVGSANVKLAQTSSVDKEEEAVIIEMQEPVTLTFACRYLNAFTKATPLSAQVQLSMCADVPLVVEYAIKELGHIRYYLAPKIEDDE 259          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_XENLA (Proliferating cell nuclear antigen OS=Xenopus laevis GN=pcna PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.390e-28
Identity = 57/92 (61.96%), Postives = 77/92 (83.70%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 300
            KFS  G++GT N+ L Q + VDK EEA  IEM+EPV LTFALRY+N FT+ATPLS TV +S+S+++P+VVEYKIA+M ++++YLAPKIE++E
Sbjct:  168 KFSASGELGTGNVKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSPTVILSMSADIPLVVEYKIADMEHVKYYLAPKIEDEE 259          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_HAPBU (Proliferating cell nuclear antigen OS=Haplochromis burtoni GN=pcna PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.427e-28
Identity = 57/91 (62.64%), Postives = 76/91 (83.52%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 297
            KFS  G++GT NI L Q + VDK +EA  IEM+EPV L FAL Y+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG+I++YLAPKI+E+
Sbjct:  168 KFSASGELGTGNIKLSQTSNVDKEDEAVTIEMNEPVQLIFALNYLNFFTKATPLSKTVTLSMSADIPLVVEYKIADMGHIKYYLAPKIDEE 258          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_DROME (Proliferating cell nuclear antigen OS=Drosophila melanogaster GN=mus209 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.782e-28
Identity = 58/92 (63.04%), Postives = 76/92 (82.61%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 300
            KFS  GD+GTANI L Q  +VDK EEA IIEM EPV+LTFA RY+N+FT+ATPLS  V +S+ +++P+VVEY I ++G+IR+YLAPKIE++E
Sbjct:  168 KFSASGDVGTANIKLAQTGSVDKEEEAVIIEMQEPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYYLAPKIEDNE 259          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_DANRE (Proliferating cell nuclear antigen OS=Danio rerio GN=pcna PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.782e-28
Identity = 56/91 (61.54%), Postives = 76/91 (83.52%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 297
            KFS  G++GT NI L Q + VDK +EA  IEM+EPV L FAL Y+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG++++YLAPKI+E+
Sbjct:  168 KFSASGELGTGNIKLSQTSNVDKEDEAVTIEMNEPVQLIFALNYLNFFTKATPLSKTVTLSMSADIPLVVEYKIADMGHVKYYLAPKIDEE 258          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_BOMMO (Proliferating cell nuclear antigen OS=Bombyx mori GN=PCNA PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.860e-26
Identity = 54/92 (58.70%), Postives = 76/92 (82.61%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 300
            KFS  GDIG+AN+ L Q  ++DK EEA +IEM EPV+LTFA +Y+N FT+AT LS  V +S+S+++P+VVEY+I ++G+IR+YLAPKIEE++
Sbjct:  168 KFSATGDIGSANVKLAQTASIDKEEEAVVIEMEEPVTLTFACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPDIGHIRYYLAPKIEEED 259          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_ANGJA (Proliferating cell nuclear antigen OS=Anguilla japonica GN=pcna PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.860e-26
Identity = 52/90 (57.78%), Postives = 75/90 (83.33%), Query Frame = 1
Query:   28 FSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 297
            FS  G++GT N+ L Q + VD+ ++A  IEM+EPV L FAL Y+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG++++YLAPKI+E+
Sbjct:  169 FSASGELGTGNVKLSQTSNVDEEDDAVTIEMNEPVQLIFALNYLNFFTKATPLSKTVTLSMSADIPLVVEYKIADMGHVKYYLAPKIDEE 258          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_STYCL (Proliferating cell nuclear antigen OS=Styela clava GN=PCNA PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 49/95 (51.58%), Postives = 76/95 (80.00%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVD-KPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 306
            +FS +GD+G   I L+QNT  D K EE   +E+ EPV LTFA++Y+N F +A+PLS +V +S+S+ +P+VVEYK+A+MG+I+++LAPKIE++E++
Sbjct:  168 QFSAKGDLGAGKIKLKQNTGSDIKEEEQVTVEISEPVQLTFAIKYLNLFAKASPLSPSVCLSMSNNVPLVVEYKVADMGHIKYFLAPKIEDEEEQ 262          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_DICDI (Proliferating cell nuclear antigen OS=Dictyostelium discoideum GN=pcna PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.353e-21
Identity = 49/90 (54.44%), Postives = 69/90 (76.67%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKP-EEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 291
            KFS  GD G+ NI ++  +  D P E+AT+IE  EPV L FAL+++++FT+ATPLS  VT+S+S  +PVVVEYKI ++G++ F+LAPKIE
Sbjct:  169 KFSVSGDSGSGNITIKPTSDSDVPAEQATVIESKEPVVLNFALKFLSNFTKATPLSPMVTLSMSEGIPVVVEYKIDDLGFLGFFLAPKIE 258          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_CAEEL (Proliferating cell nuclear antigen OS=Caenorhabditis elegans GN=pcn-1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20
Identity = 44/92 (47.83%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   28 FSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 303
            F+ +GDIG++ +    ++  D   EA  +E+ +PV++ F+++YMN FT+AT LS+ V +SL +++PVVVEY I E GY+RFYLAPKI++DE+
Sbjct:  136 FTGKGDIGSSVVTYSPSSNTDDETEAVTLEVKDPVNVNFSIKYMNQFTKATALSDRVRLSLCNDVPVVVEYPIEENGYLRFYLAPKIDDDEN 227          
The following BLAST results are available for this feature:
BLAST of CX299821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PCNA_SARCR1.987e-2863.04Proliferating cell nuclear antigen OS=Sarcophaga c... [more]
PCNA_XENLA3.390e-2861.96Proliferating cell nuclear antigen OS=Xenopus laev... [more]
PCNA_HAPBU4.427e-2862.64Proliferating cell nuclear antigen OS=Haplochromis... [more]
PCNA_DROME5.782e-2863.04Proliferating cell nuclear antigen OS=Drosophila m... [more]
PCNA_DANRE5.782e-2861.54Proliferating cell nuclear antigen OS=Danio rerio ... [more]
PCNA_BOMMO1.860e-2658.70Proliferating cell nuclear antigen OS=Bombyx mori ... [more]
PCNA_ANGJA1.860e-2657.78Proliferating cell nuclear antigen OS=Anguilla jap... [more]
PCNA_STYCL1.128e-2351.58Proliferating cell nuclear antigen OS=Styela clava... [more]
PCNA_DICDI2.353e-2154.44Proliferating cell nuclear antigen OS=Dictyosteliu... [more]
PCNA_CAEEL1.168e-2047.83Proliferating cell nuclear antigen OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionC07002G12SK NTLeaf1 Citrus clementina cDNA clone C07002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299821 ID=CX299821; Name=CX299821; organism=Citrus clementina; type=EST; length=537bp
GCTGCAGGAATTCGGCCACGAGGGAAGTTCTCTACCAGAGGTGATATTGG
AACTGCTAATATTGTGCTCAGGCAAAATACTACAGTAGACAAGCCAGAAG
AAGCAACAATAATTGAAATGCATGAGCCAGTGTCATTGACTTTTGCTCTG
AGATACATGAATTCATTCACAAGGGCTACTCCACTGTCGAATACTGTTAC
TATCAGCCTATCCTCAGAATTGCCAGTTGTGGTCGAATACAAGATTGCTG
AGATGGGTTATATTAGATTCTACTTGGCACCCAAGATAGAAGAAGATGAG
GATGAGACCAAGCCTCAAGTTTAAGTGTCATTTGGCACGTAGGCTATGGC
ATTTTGTTGAATCAAGTTACTCCTATATTTTAAGTTTGCTTTTAGAATGT
TTCTCGTAAATCTTCATGTTGGAAAACCAAGCATTTGTAGTTCGGTAGAT
TGTTAAAAACTCCTTTCATGTGCTTGGCTTTTTTATCCTACTGTTGTACA
TGTAATCAATTCCTTTGTCAAAAAAAAAAAAAAAAAA
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