CX299871

Overview
NameCX299871
Unique NameCX299871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 1
Query:  298 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFA 552
            G   V+C+ + S+P ++F I G    L P  Y+L     +   C  G     +  P G PLWILGDVF+  Y+TVFD +  RVGFA
Sbjct:  306 GNFVVNCNSIQSMPTITFVISGSPLPLPPSTYVLN----NNGYCTLGIEVTYLPSPNGQPLWILGDVFLREYYTVFDMAANRVGFA 387          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: PEPC_CALJA (Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 1
Query:  298 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 561
            G+  V+C  + +LP ++F I G  F L P  YIL     +   C  G     ++     PLWILGDVF+  Y++VFD  N RVGFA AA
Sbjct:  304 GQFLVNCDSIQNLPTLTFIINGVEFPLPPSSYILS----NNGYCTVGVEPTYLSSQNSQPLWILGDVFLRSYYSVFDLGNNRVGFATAA 388          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: CARP_NANOT (Vacuolar protease A OS=Nannizzia otae (strain CBS 113480) GN=PEP2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  298 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 558
            G+  +DC++  SLP ++FT+ G  F + P  Y L+V    +  CIS F  +D   P GPL ILGD F+  +++V+D     VG A+A
Sbjct:  312 GQYTIDCAKRDSLPDLTFTLSGHNFTIGPYDYTLEV----SGTCISSFMGMDFPEPVGPLAILGDSFLRRWYSVYDLGKGTVGLAKA 394          
The following BLAST results are available for this feature:
BLAST of CX299871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PEPB_CANFA4.511e-1140.70Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]
PEPC_CALJA7.694e-1141.57Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1[more]
CARP_NANOT7.694e-1139.08Vacuolar protease A OS=Nannizzia otae (strain CBS ... [more]

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Properties
Property NameValue
Genbank descriptionC07003D11SK NTLeaf1 Citrus clementina cDNA clone C07003D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299871 ID=CX299871; Name=CX299871; organism=Citrus clementina; type=EST; length=583bp
GTAGTTTCACAATATGGAGAGGAGATCATCAATATGCTTTTAGCTAAGGA
TGAACCTCAAAAAATTTGCTCACAGATTGGTTTGTGCACATTTGATGGGT
CTCGAGATGTGAGTATGGGCATTGAGAGTGTCGTTCCTGAGAATAATCAT
AGAGCATCTGGTGGTTTCCATGATGCAATGTGCTCTACTTGTGAGATGGC
AGTTGTGTGGATGCAGAACCAGCTCAAGCAGAACCAAACACAAGAGCGCA
TTCTTAACTATGTCAATGAGCTCTGTGATCGGTTGCCTAGTCCTATGGGA
GAATCGGCTGTTGACTGTAGCAGATTGTCTTCCTTGCCTATTGTTTCCTT
TACGATTGGTGGAAAGATATTTGACCTTACTCCTGATCAGTACATCCTCA
AAGTGGGCGAGGGAGATGCAGCTCAATGTATAAGTGGATTCTCAGCTCTA
GATGTTGCCCCACCACGTGGACCTCTCTGGATCTTGGGGGATGTTTTTAT
GGGTCCCTACCACACAGTCTTTGACTACAGCAACATGAGAGTGGGATTTG
CTGAAGCCGCGTAAATAAGTTTGTTTTAAATAT
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