CX299875

Overview
NameCX299875
Unique NameCX299875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 6.254e-45
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            R+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   40 RFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 8.167e-45
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            R+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:   41 RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.067e-44
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.067e-44
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.067e-44
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.067e-44
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_RABIT (Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.067e-44
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_PIG (Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.067e-44
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_MOUSE (Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.067e-44
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX299875 vs. ExPASy Swiss-Prot
Match: H33_HUMAN (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.067e-44
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:    3 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 290
            RYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CX299875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H3_MASBA6.254e-4594.79Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H32_CICIN8.167e-4594.79Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H33_XENTR1.067e-4494.79Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1... [more]
H33_XENLA1.067e-4494.79Histone H3.3 OS=Xenopus laevis PE=1 SV=3[more]
H33_SPISO1.067e-4494.79Histone H3.3 OS=Spisula solidissima PE=1 SV=2[more]
H33_RAT1.067e-4494.79Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV... [more]
H33_RABIT1.067e-4494.79Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=... [more]
H33_PIG1.067e-4494.79Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3[more]
H33_MOUSE1.067e-4494.79Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2[more]
H33_HUMAN1.067e-4494.79Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC07003E03SK NTLeaf1 Citrus clementina cDNA clone C07003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299875 ID=CX299875; Name=CX299875; organism=Citrus clementina; type=EST; length=469bp
ATCGTTACCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATATCAA
AAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGTTCG
TGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACGCGG
TTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTCGAG
GACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCCCAA
GGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTAATTTGTGA
TTCCTTAGGTAGTCGTCAGTTTCCTATTTAGTTTGCTAGTTTTTCTTTAT
TTCGGTTTTTACATGTAAAGAATGATATGATGGATTGAAGAATATTTGGC
ATTTGATATTTGCTAGATAAATGTTTATTGTGGAGCTTATCTTGTTTCAC
TTTACCTTCAAAAAAAAAA
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