CX299882
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299882 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11 Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 1 Query: 46 SEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 516 S+ AL L + P + Q W +PC W +TC+ +RVT++ L LSG L L KL L L+L NN+ G +P + +L L+L NN +G SL+++ L +L L N+ GQI + + SL +D S N ++P + Sbjct: 30 SDTSALNTLFSGMHSPAQLTQ-WTAAAGDPCGQNWRGVTCS-GSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFP--PNLQRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTNSLPAT 185
BLAST of CX299882 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11 Identity = 61/211 (28.91%), Postives = 96/211 (45.50%), Query Frame = 1 Query: 4 IIGSSSLVAVVSGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHL----------------------QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLN--NFENN 558 +I SL ++ + A+ +L +L P +L W + +PC +W + CN ++V + L ++NL G L L L Q L L NN GTIP L +LKSL + L NN +SGKIP L ++ + L+ N L+G +P + +S+L + + +N L G + + +PL N ENN Sbjct: 22 LISLPSLSLALTNPDDVAAINSLFLALESP--LLPGWVASGGDPCGESWQGVLCNA-SQVETIILISANLGGELGVGLNMFTSLKAMDFSNNHIGGSIPSTLPVSLQNLFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQNLSTLTSLLLQNNHLSGELDV---LQDLPLKDLNVENN 226
BLAST of CX299882 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11 Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = 1 Query: 148 HITC-------NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-----------LGN------------LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 510 +ITC N V R+ L + NL+G + PE KL HL+ L+L +N++ G+IP E +GN L L +L L N SG IPP + +L L L L N TG + +L + +L + +S N+ G IP Sbjct: 76 NITCDCSFLPQNSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIP 226
BLAST of CX299882 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11 Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 1 Query: 130 NPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 516 +PC W + C+ N +T + + + G L L +Q ++ N+I GTIP L + S+ +L L +N +G IP +L+ L L L L N L+G+IP +S L +D+SSN L G +P+S Sbjct: 55 DPCGEKWQGVVCDSSN-ITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPS--SIRNLSLSSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSS 182
BLAST of CX299882 vs. ExPASy Swiss-Prot
Match: Y2278_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11 Identity = 58/168 (34.52%), Postives = 83/168 (49.40%), Query Frame = 1 Query: 43 NSEGDALYALRRSLSDPDNVLQSWDPTL----VNPCTWFHITCNQDNRVTRLDLGN--SNLSG---RLVPELGKLEHLQYLELYKNNIQGTI-PVELGNLK-SLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 513 +SE L +++ L P VLQSW T + P I C + GN S LSG +L L +L L+ L L I G++ P + L SL SL+L +N ISGKIP + LK+L L L DN G + +L G+S+L+ +D+ N L +P+ Sbjct: 31 SSESQTLLEIQKQLQYPQ-VLQSWTDTTNFCHIRPSPSLRIICLHGHVTELTVTGNRTSKLSGSFHKLFTLLTQLSSLKTLSLTSLGISGSLSPKIITKLSPSLESLNLSSNFISGKIPEEIVSLKNLKSLVLRDNMFWGFVSDDLRGLSNLQELDLGGNKLGPEVPS 197 The following BLAST results are available for this feature:
BLAST of CX299882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 115
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299882 ID=CX299882; Name=CX299882; organism=Citrus clementina; type=EST; length=561bpback to top |