CX299882

Overview
NameCX299882
Unique NameCX299882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299882 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 1
Query:   46 SEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 516
            S+  AL  L   +  P  + Q W     +PC   W  +TC+  +RVT++ L    LSG L    L KL  L  L+L  NN+ G +P +     +L  L+L NN  +G    SL+++  L +L L  N+  GQI  +   + SL  +D S N    ++P +
Sbjct:   30 SDTSALNTLFSGMHSPAQLTQ-WTAAAGDPCGQNWRGVTCS-GSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFP--PNLQRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTNSLPAT 185          
BLAST of CX299882 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 61/211 (28.91%), Postives = 96/211 (45.50%), Query Frame = 1
Query:    4 IIGSSSLVAVVSGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHL----------------------QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLN--NFENN 558
            +I   SL   ++   +  A+ +L  +L  P  +L  W  +  +PC  +W  + CN  ++V  + L ++NL G L   L     L                      Q L L  NN  GTIP  L +LKSL  + L NN +SGKIP     L  ++ + L+ N L+G +P  +  +S+L  + + +N L G +      + +PL   N ENN
Sbjct:   22 LISLPSLSLALTNPDDVAAINSLFLALESP--LLPGWVASGGDPCGESWQGVLCNA-SQVETIILISANLGGELGVGLNMFTSLKAMDFSNNHIGGSIPSTLPVSLQNLFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQNLSTLTSLLLQNNHLSGELDV---LQDLPLKDLNVENN 226          
BLAST of CX299882 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = 1
Query:  148 HITC-------NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-----------LGN------------LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 510
            +ITC       N    V R+ L + NL+G + PE  KL HL+ L+L +N++ G+IP E           +GN            L  L +L L  N  SG IPP + +L  L  L L  N  TG +  +L  + +L  + +S N+  G IP
Sbjct:   76 NITCDCSFLPQNSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIP 226          
BLAST of CX299882 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  130 NPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 516
            +PC   W  + C+  N +T + +    + G L   L     +Q ++   N+I GTIP  L +  S+ +L L +N  +G IP +L+ L  L  L L  N L+G+IP     +S L  +D+SSN L G +P+S
Sbjct:   55 DPCGEKWQGVVCDSSN-ITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPS--SIRNLSLSSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSS 182          
BLAST of CX299882 vs. ExPASy Swiss-Prot
Match: Y2278_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 58/168 (34.52%), Postives = 83/168 (49.40%), Query Frame = 1
Query:   43 NSEGDALYALRRSLSDPDNVLQSWDPTL----VNPCTWFHITCNQDNRVTRLDLGN--SNLSG---RLVPELGKLEHLQYLELYKNNIQGTI-PVELGNLK-SLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 513
            +SE   L  +++ L  P  VLQSW  T     + P     I C   +       GN  S LSG   +L   L +L  L+ L L    I G++ P  +  L  SL SL+L +N ISGKIP  +  LK+L  L L DN   G +  +L G+S+L+ +D+  N L   +P+
Sbjct:   31 SSESQTLLEIQKQLQYPQ-VLQSWTDTTNFCHIRPSPSLRIICLHGHVTELTVTGNRTSKLSGSFHKLFTLLTQLSSLKTLSLTSLGISGSLSPKIITKLSPSLESLNLSSNFISGKIPEEIVSLKNLKSLVLRDNMFWGFVSDDLRGLSNLQELDLGGNKLGPEVPS 197          
The following BLAST results are available for this feature:
BLAST of CX299882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
SRF6_ARATH1.886e-1131.88Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF1_ARATH1.886e-1128.91Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
Y1765_ARATH2.463e-1132.45Probable LRR receptor-like serine/threonine-protei... [more]
SUB_ARATH2.463e-1133.59Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
Y2278_ARATH9.361e-1134.52Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC07003E11SK NTLeaf1 Citrus clementina cDNA clone C07003E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299882 ID=CX299882; Name=CX299882; organism=Citrus clementina; type=EST; length=561bp
ATAATAATAGGGAGCAGCAGCTTGGTGGCGGTGGTGAGTGGAAACTCGGA
GGGGGACGCGCTGTACGCGCTCAGGAGAAGCCTATCAGATCCCGATAACG
TGCTTCAGAGCTGGGATCCAACTCTCGTCAATCCCTGCACTTGGTTTCAC
ATAACCTGTAATCAGGACAACCGCGTTACCCGACTGGATTTGGGTAATTC
AAATCTATCCGGCCGTCTCGTCCCTGAACTGGGCAAGCTCGAGCATTTGC
AATACCTGGAACTTTACAAAAACAACATCCAAGGAACTATCCCTGTCGAG
CTCGGTAACTTGAAGAGCCTCATCAGCTTGGACTTGTATAATAACAACAT
CTCGGGGAAAATCCCTCCTTCCTTGGCTAAATTGAAATCTCTTGTTTTTT
TGCGGCTTAACGATAATCGGCTAACTGGACAAATTCCCAGGGAACTTGTT
GGAATTTCAAGTCTCAAAGTTGTGGATGTTTCAAGCAATGATCTGTGTGG
AACAATTCCTACAAGCGGACCATTTGAACACATCCCACTCAACAACTTTG
AGAATAACCCT
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